Annotation details (ID: 187)

Experiment ID: 51

Field Description
namehiv-associated gut microbiome
namean altered intestinal mucosal microbiome in hiv-1 infection is associated with mucosal and systemic immune activation and endotoxemia
srasrp033311
datamd5f9c3bfa30162624a88cf5178e166e960
mapmd5e6d2203341fac714c81eee89818327d6

Annotations Details

Exp. ID User ID Description Date Region Flag Sequences
51amnonlower in stool compared to biopsies ( high in biopsy site biopsy compared to feces in homo sapiens united states of america )2017-01-19v4No14
Field Description
descriptionlower in stool compared to biopsies
typediffexp
num_sequences14
regionv4
flags0
agentcalour
methodna
date2017-01-19
usernameamnon
privaten
highbiopsy site
highbiopsy
lowfeces
allhomo sapiens
allunited states of america

Annotation not flagged as potentially problematic

Sequences

Ontology terms (including parents)

high: site experimental process planned process occurrent biopsy entity process collecting specimen from organism na specimen collection process biopsy site experimental factor

low: excreta anatomy basic component material entity organism substance feces entity animal body or body part organism part anatomical entity continuant material anatomical entity nonmeat part of animal part of plant or animal na anatomical structure independent continuant part of animal experimental factor

all: euteleostomi catarrhini geographic location united states of america eumetazoa amniota root homo sapiens opisthokonta eutheria na boreoeutheria independent continuant homo gnathostomata <vertebrate> craniata <chordata> vertebrata <metazoa> dipnotetrapodomorpha continuant sarcopterygii teleostomi cellular organisms hominoidea haplorrhini material entity mammalia experimental factor chordata homininae metazoa euarchontoglires deuterostomia entity eukaryota hominidae bilateria tetrapoda organism simiiformes primates theria <mammalia>

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