Annotation details (ID: 3046)

Experiment ID: 410

Field Description
namecompositional and temporal changes in the gut microbiome of pediatric ulcerative colitis patients are linked to disease course
sraprjna436359
datamd524f95e8c7cd67f37f1251c22d179490e
mapmd5fd2b4f7d06cf59a51bf0b935ab211181

Annotations Details

Exp. ID User ID Description Date Region Flag Sequences
410amnonlower in feces compared to rectal biopsies in children with treatment naive uc ( high in rectum biopsy site biopsy compared to feces in homo sapiens united states of america child ulcerative colitis )2018-11-22v4No118
Field Description
descriptionlower in feces compared to rectal biopsies in children with treatment naive uc
typediffexp
num_sequences118
regionv4
flags0
agentcalour
methodna
date2018-11-22
usernameamnon
privaten
highrectum
highbiopsy site
highbiopsy
lowfeces
allhomo sapiens
allunited states of america
allchild
allulcerative colitis

Annotation not flagged as potentially problematic

Sequences

Ontology terms (including parents)

high: site occurrent biopsy organ part collecting specimen from organism na specimen collection process independent continuant rectum organism part continuant subdivision of digestive tract anatomical system anatomical structure subdivision of tube experimental process process material entity biopsy site experimental factor anatomy basic component planned process digestive system entity anatomical entity material anatomical entity multicellular anatomical structure

low: excreta anatomy basic component material entity organism substance feces entity animal body or body part organism part anatomical entity continuant material anatomical entity nonmeat part of animal part of plant or animal na anatomical structure independent continuant part of animal experimental factor

all: colitis euteleostomi catarrhini geographic location united states of america eumetazoa amniota root homo sapiens opisthokonta eutheria na boreoeutheria independent continuant homo gnathostomata <vertebrate> craniata <chordata> inflammatory bowel disease vertebrata <metazoa> dipnotetrapodomorpha continuant disease sarcopterygii teleostomi cellular organisms child disease of anatomical entity hominoidea haplorrhini material entity ulcerative colitis intestinal disease mammalia experimental factor chordata dbbact root homininae metazoa euarchontoglires deuterostomia gastrointestinal system disease entity eukaryota hominidae bilateria tetrapoda organism simiiformes primates theria <mammalia>

Problems / suggestions? Please email info AT dbbact DOT org