Experiment ID: 102

Field Description
nameoral microbiome in hiv-associated periodontitis
srasrp079702
datamd5185734e4343b0f830c6dbba4b42b4af5
mapmd5dbe41c67e5bb528881817fdce7e92c91

Annotations for experiment:

term enrichment score
TermScore
atlanta0.500000
cheek0.476190
LOWER IN cheek0.266667
LOWER IN dentition0.146341
LOWER IN hiv infection0.137931
hiv infection0.129032
LOWER IN saliva0.101695
LOWER IN periodontitis0.095238
periodontitis0.086957
dentition0.077670
mouth0.076923
saliva0.041237
LOWER IN control0.011516
control0.011385
united states of america0.008264
homo sapiens0.007634
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN cheek0.500000
cheek0.500000
atlanta0.333333
LOWER IN hiv infection0.111111
LOWER IN dentition0.100000
LOWER IN periodontitis0.100000
hiv infection0.100000
periodontitis0.083333
LOWER IN saliva0.062500
dentition0.043478
mouth0.040000
saliva0.023256
LOWER IN control0.005882
control0.005814
united states of america0.004149
homo sapiens0.003831
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
atlanta1.000000
united states of america1.000000
mouth1.000000
cheek0.454545
dentition0.363636
LOWER IN dentition0.272727
LOWER IN saliva0.272727
LOWER IN control0.272727
control0.272727
saliva0.181818
LOWER IN cheek0.181818
LOWER IN hiv infection0.181818
hiv infection0.181818
periodontitis0.090909
LOWER IN periodontitis0.090909
Exp. ID User ID Description Date Region Flag Sequences
102amnon high in hiv infection compared to control in homo sapiens atlanta united states of america cheek mouth 2017-04-04v4No1 / 2
102amnon high in hiv infection compared to control in homo sapiens atlanta united states of america dentition mouth 2017-04-04v4No1 / 4
102amnon high in control compared to periodontitis in homo sapiens atlanta united states of america mouth 2017-04-04v4No1 / 7
102amnon high in control compared to hiv infection in homo sapiens atlanta united states of america cheek mouth 2017-04-04v4No1 / 15
102amnon high in control compared to hiv infection in homo sapiens atlanta united states of america dentition mouth 2017-04-04v4No1 / 18
102amnonlower in teeth compared to cheeks, saliva ( high in saliva cheek compared to dentition in homo sapiens atlanta united states of america mouth )2017-04-03v4No1 / 37
102amnonlower in saliva compared to teeth, cheek ( high in dentition cheek compared to saliva in homo sapiens atlanta united states of america mouth )2017-04-03v4No1 / 39
102amnonhigher in cheeks compared to teeth, saliva ( high in cheek compared to saliva dentition in homo sapiens atlanta united states of america mouth )2017-04-03v4No1 / 41
102amnon high in periodontitis compared to control in homo sapiens atlanta united states of america mouth 2017-04-04v4No1 / 53
102amnonhigher in teeth compared to cheeks, saliva ( high in dentition compared to saliva cheek in homo sapiens atlanta united states of america mouth )2017-04-03v4No1 / 63
102amnonhigher in saliva compared to teeth, cheek ( high in saliva compared to dentition cheek in homo sapiens atlanta united states of america mouth )2017-04-03v4No1 / 65

Problems / suggestions? Please email info AT dbbact DOT org