dbBact

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Experiment ID: 119

Field	Description
name	chronic trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of lactobacilli
sra	erp006108
sra	prjeb6560
datamd5	d6c5ecf36801960e8246874f0745c6d3
mapmd5	22723bb03fa6eb43c1796b455b683f74

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN trichuris muris	0.333333
trichuris muris	0.333333
LOWER IN parasitic helminthiasis infectious disease	0.285714
parasitic helminthiasis infectious disease	0.285714
sweden	0.181818
late timepoints	0.181818
LOWER IN late timepoints	0.153846
mouse	0.037736
mus musculus	0.033333
research facility	0.018349
LOWER IN control	0.013889
control	0.013793
feces	0.008734

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN trichuris muris	0.500000
trichuris muris	0.500000
LOWER IN parasitic helminthiasis infectious disease	0.333333
parasitic helminthiasis infectious disease	0.333333
late timepoints	0.142857
LOWER IN late timepoints	0.111111
sweden	0.100000
mouse	0.019231
mus musculus	0.016949
research facility	0.009259
LOWER IN control	0.007143
control	0.007092
feces	0.004386

Fraction of annotations for the query sequences containing the term

Term	Score
mus musculus	1.000000
mouse	1.000000
feces	1.000000
research facility	1.000000
sweden	1.000000
control	0.250000
LOWER IN parasitic helminthiasis infectious disease	0.250000
LOWER IN trichuris muris	0.250000
LOWER IN late timepoints	0.250000
parasitic helminthiasis infectious disease	0.250000
trichuris muris	0.250000
late timepoints	0.250000
LOWER IN control	0.250000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
119	amnon	dominant mus musculus, mouse, feces, research facility, sweden	2017-04-12	v4	No	1 / 18
119	amnon	higher in late timepoints (>4weeks) of worm infected mice ( high in parasitic helminthiasis infectious disease trichuris muris late timepoints compared to control in mus musculus mouse feces research facility sweden )	2017-04-12	v4	No	1 / 40
119	amnon	lower in late timepoints (>4weeks) of worm infected mice ( high in control compared to parasitic helminthiasis infectious disease trichuris muris late timepoints in mus musculus mouse feces research facility sweden )	2017-04-12	v4	No	1 / 155
119	amnon	common mus musculus, mouse, feces, research facility, sweden	2017-04-12	v4	No	1 / 239

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