dbBact

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Experiment ID: 119

Field	Description
name	chronic trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of lactobacilli
sra	erp006108
sra	prjeb6560
datamd5	d6c5ecf36801960e8246874f0745c6d3
mapmd5	22723bb03fa6eb43c1796b455b683f74

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN trichuris muris	0.333333
trichuris muris	0.333333
LOWER IN parasitic helminthiasis infectious disease	0.222222
parasitic helminthiasis infectious disease	0.222222
LOWER IN late timepoints	0.142857
late timepoints	0.142857
sweden	0.125000
mouse	0.034483
mus musculus	0.031250
research facility	0.013514
control	0.010582
LOWER IN control	0.010582
feces	0.006349

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN trichuris muris	0.500000
trichuris muris	0.500000
LOWER IN parasitic helminthiasis infectious disease	0.200000
parasitic helminthiasis infectious disease	0.200000
LOWER IN late timepoints	0.100000
late timepoints	0.100000
sweden	0.066667
mouse	0.017544
mus musculus	0.015873
research facility	0.006803
control	0.005405
LOWER IN control	0.005405
feces	0.003185

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
research facility	1.000000
mus musculus	1.000000
sweden	1.000000
mouse	1.000000
control	0.250000
LOWER IN parasitic helminthiasis infectious disease	0.250000
LOWER IN late timepoints	0.250000
LOWER IN trichuris muris	0.250000
parasitic helminthiasis infectious disease	0.250000
late timepoints	0.250000
trichuris muris	0.250000
LOWER IN control	0.250000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
119	amnon	dominant feces, research facility, mus musculus, sweden, mouse	2017-04-12	v4	No	1 / 18
119	amnon	higher in late timepoints (>4weeks) of worm infected mice ( high in parasitic helminthiasis infectious disease late timepoints trichuris muris compared to control in feces research facility mus musculus sweden mouse )	2017-04-12	v4	No	1 / 40
119	amnon	lower in late timepoints (>4weeks) of worm infected mice ( high in control compared to parasitic helminthiasis infectious disease late timepoints trichuris muris in feces research facility mus musculus sweden mouse )	2017-04-12	v4	No	1 / 155
119	amnon	common feces, research facility, mus musculus, sweden, mouse	2017-04-12	v4	No	1 / 239

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