dbBact

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Experiment ID: 119

Field	Description
name	chronic trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of lactobacilli
sra	erp006108
sra	prjeb6560
datamd5	d6c5ecf36801960e8246874f0745c6d3
mapmd5	22723bb03fa6eb43c1796b455b683f74

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN trichuris muris	0.333333
trichuris muris	0.333333
LOWER IN parasitic helminthiasis infectious disease	0.222222
parasitic helminthiasis infectious disease	0.222222
LOWER IN late timepoints	0.142857
late timepoints	0.142857
sweden	0.117647
mouse	0.032258
mus musculus	0.029412
research facility	0.012270
control	0.010309
LOWER IN control	0.010309
feces	0.005780

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN trichuris muris	0.500000
trichuris muris	0.500000
LOWER IN parasitic helminthiasis infectious disease	0.200000
parasitic helminthiasis infectious disease	0.200000
LOWER IN late timepoints	0.100000
late timepoints	0.100000
sweden	0.062500
mouse	0.016393
mus musculus	0.014925
research facility	0.006173
control	0.005263
LOWER IN control	0.005263
feces	0.002899

Fraction of annotations for the query sequences containing the term

Term	Score
mus musculus	1.000000
mouse	1.000000
feces	1.000000
research facility	1.000000
sweden	1.000000
control	0.250000
LOWER IN parasitic helminthiasis infectious disease	0.250000
LOWER IN trichuris muris	0.250000
LOWER IN late timepoints	0.250000
parasitic helminthiasis infectious disease	0.250000
trichuris muris	0.250000
late timepoints	0.250000
LOWER IN control	0.250000

Number of experiments associating the term to the sequence

Term	Score
mus musculus	1.000000
mouse	1.000000
feces	1.000000
research facility	1.000000
sweden	1.000000
control	1.000000
LOWER IN parasitic helminthiasis infectious disease	1.000000
LOWER IN trichuris muris	1.000000
LOWER IN late timepoints	1.000000
parasitic helminthiasis infectious disease	1.000000
trichuris muris	1.000000
late timepoints	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
119	amnon	dominant mus musculus, mouse, feces, research facility, sweden	2017-04-12	v4	1 / 18	approved	No
119	amnon	higher in late timepoints (>4weeks) of worm infected mice ( high in parasitic helminthiasis infectious disease trichuris muris late timepoints compared to control in mus musculus mouse feces research facility sweden )	2017-04-12	v4	1 / 40	approved	No
119	amnon	lower in late timepoints (>4weeks) of worm infected mice ( high in control compared to parasitic helminthiasis infectious disease trichuris muris late timepoints in mus musculus mouse feces research facility sweden )	2017-04-12	v4	1 / 155	approved	No
119	amnon	common mus musculus, mouse, feces, research facility, sweden	2017-04-12	v4	1 / 239	approved	No

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