dbBact

Experiment ID: 13

Field	Description
name	spatial heterogeneity of gut microbial composition along the gastrointestinal tract in natural populations of house mice
sra	erp016947
sra	prjeb15238
datamd5	40c3c1bc42d28ba0baf43fa63e1828dd
mapmd5	3e764deaff3855d5bf42a0374f9c959e

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN esophagus	0.500000
esophagus	0.333333
gastrointestinal system	0.250000
LOWER IN mouth	0.222222
LOWER IN rectum	0.222222
LOWER IN stomach	0.166667
rectum	0.142857
LOWER IN duodenum	0.142857
duodenum	0.125000
LOWER IN ileum	0.117647
stomach	0.105263
LOWER IN colon	0.100000
ileum	0.095238
LOWER IN caecum	0.095238
colon	0.080000
mouth	0.074074
LOWER IN feces	0.062500
caecum	0.039216
mus musculus	0.027027
united states of america	0.006757
feces	0.004728

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN esophagus	0.500000
esophagus	0.250000
LOWER IN mouth	0.142857
gastrointestinal system	0.142857
LOWER IN rectum	0.142857
LOWER IN stomach	0.100000
rectum	0.083333
LOWER IN duodenum	0.083333
duodenum	0.071429
LOWER IN ileum	0.066667
stomach	0.058824
LOWER IN colon	0.055556
ileum	0.052632
LOWER IN caecum	0.052632
colon	0.043478
mouth	0.040000
LOWER IN feces	0.033333
caecum	0.020408
mus musculus	0.013699
united states of america	0.003390
feces	0.002375

Fraction of annotations for the query sequences containing the term

Term	Score
united states of america	1.000000
gastrointestinal system	1.000000
mus musculus	1.000000
feces	0.500000
rectum	0.500000
caecum	0.500000
colon	0.500000
LOWER IN stomach	0.500000
LOWER IN esophagus	0.500000
LOWER IN duodenum	0.500000
LOWER IN ileum	0.500000
LOWER IN mouth	0.500000
stomach	0.500000
esophagus	0.500000
duodenum	0.500000
ileum	0.500000
mouth	0.500000
LOWER IN feces	0.500000
LOWER IN rectum	0.500000
LOWER IN caecum	0.500000
LOWER IN colon	0.500000

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
rectum	1.000000
caecum	1.000000
colon	1.000000
LOWER IN stomach	1.000000
LOWER IN esophagus	1.000000
LOWER IN duodenum	1.000000
LOWER IN ileum	1.000000
LOWER IN mouth	1.000000
united states of america	1.000000
gastrointestinal system	1.000000
mus musculus	1.000000
stomach	1.000000
esophagus	1.000000
duodenum	1.000000
ileum	1.000000
mouth	1.000000
LOWER IN feces	1.000000
LOWER IN rectum	1.000000
LOWER IN caecum	1.000000
LOWER IN colon	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
13	amnon	high in stomach esophagus duodenum ileum mouth compared to feces rectum caecum colon in united states of america gastrointestinal system mus musculus	2016-11-08	v4	1 / 25	approved	No
13	amnon	high in feces rectum caecum colon compared to stomach esophagus duodenum ileum mouth in united states of america gastrointestinal system mus musculus	2016-11-08	v4	1 / 316	approved	No

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