dbBact

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Experiment ID: 188

Field	Description
name	chemical and pathogen-induced inflammation disrupt the murine intestinal microbiome
sra	srp114866
sra	prjna348350
datamd5	ef75fbc7ee4fece952696f5afa024002
mapmd5	961849624a9532aa91b46d31ad122328

Annotations for experiment:

term enrichment score

Term	Score
cba/caj	0.500000
taconic farms	0.333333
LOWER IN dextran sulfate sodium	0.333333
LOWER IN dss	0.333333
cba/j mice	0.333333
pathogen	0.117647
mouse	0.034286
mus musculus	0.031088
female	0.030769
research facility	0.013483
control	0.010582
united states of america	0.007968
feces	0.006342

Fraction of dbbact annotations with this term covered by the query

Term	Score
cba/caj	0.500000
LOWER IN dextran sulfate sodium	0.500000
LOWER IN dss	0.500000
cba/j mice	0.500000
taconic farms	0.250000
pathogen	0.076923
mouse	0.017544
female	0.015873
mus musculus	0.015873
research facility	0.006803
control	0.005405
united states of america	0.004049
feces	0.003185

Fraction of annotations for the query sequences containing the term

Term	Score
feces	0.750000
research facility	0.750000
mus musculus	0.750000
mouse	0.750000
female	0.500000
cba/caj	0.500000
taconic farms	0.500000
control	0.250000
LOWER IN dextran sulfate sodium	0.250000
LOWER IN dss	0.250000
united states of america	0.250000
cba/j mice	0.250000
pathogen	0.250000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
188	amnon	Salmonella enterica (other pathogen)	2017-08-24	v4	No	1 / 1
188	amnon	dominant feces, female, research facility, mus musculus, cba/caj, mouse, taconic farms	2017-10-25	v4	No	1 / 20
188	amnon	disappears in mice after dss treatment ( high in control compared to dextran sulfate sodium dss in feces united states of america research facility mus musculus mouse cba/j mice )	2017-08-24	v4	No	1 / 37
188	amnon	common feces, female, research facility, mus musculus, cba/caj, mouse, taconic farms	2017-10-25	v4	No	1 / 185

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