dbBact

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Experiment ID: 188

Field	Description
name	chemical and pathogen-induced inflammation disrupt the murine intestinal microbiome
sra	srp114866
sra	prjna348350
datamd5	ef75fbc7ee4fece952696f5afa024002
mapmd5	961849624a9532aa91b46d31ad122328

Annotations for experiment:

term enrichment score

Term	Score
cba/caj	0.500000
taconic farms	0.333333
cba/j mice	0.333333
LOWER IN dextran sulfate sodium	0.333333
LOWER IN dss	0.333333
pathogen	0.117647
mouse	0.035503
female	0.033898
mus musculus	0.031579
research facility	0.015584
control	0.012121
united states of america	0.008696
feces	0.007264

Fraction of dbbact annotations with this term covered by the query

Term	Score
cba/caj	0.500000
cba/j mice	0.500000
LOWER IN dextran sulfate sodium	0.500000
LOWER IN dss	0.500000
taconic farms	0.250000
pathogen	0.076923
mouse	0.018182
female	0.017544
mus musculus	0.016129
research facility	0.007874
control	0.006211
united states of america	0.004425
feces	0.003650

Fraction of annotations for the query sequences containing the term

Term	Score
mus musculus	0.750000
mouse	0.750000
research facility	0.750000
feces	0.750000
female	0.500000
cba/caj	0.500000
taconic farms	0.500000
united states of america	0.250000
cba/j mice	0.250000
control	0.250000
LOWER IN dextran sulfate sodium	0.250000
LOWER IN dss	0.250000
pathogen	0.250000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
188	amnon	Salmonella enterica (other pathogen)	2017-08-24	v4	No	1 / -7
188	amnon	dominant mus musculus, mouse, research facility, female, cba/caj, taconic farms, feces	2017-10-25	v4	No	1 / 12
188	amnon	disappears in mice after dss treatment ( high in control compared to dextran sulfate sodium dss in mus musculus mouse research facility feces united states of america cba/j mice )	2017-08-24	v4	No	1 / 29
188	amnon	common mus musculus, mouse, research facility, female, cba/caj, taconic farms, feces	2017-10-25	v4	No	1 / 177

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