dbBact

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Experiment ID: 191

Field	Description
name	replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of us women
sra	srp115697
datamd5	ddb46343d3660a8f1a9612e08179be81
mapmd5	d7390ec6ece3c4f00f361584739a444c

Annotations for experiment:

term enrichment score

Term	Score
vagina	0.285714
LOWER IN premature birth	0.250000
premature birth	0.250000
last trimerster	0.250000
LOWER IN first trimester	0.250000
LOWER IN last trimester	0.250000
first trimester	0.222222
pregnancy	0.200000
female	0.044444
LOWER IN control	0.013423
control	0.013333
homo sapiens	0.010256
united states of america	0.009524

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN premature birth	0.500000
premature birth	0.500000
last trimerster	0.500000
LOWER IN first trimester	0.500000
LOWER IN last trimester	0.500000
first trimester	0.333333
vagina	0.166667
pregnancy	0.111111
female	0.022727
LOWER IN control	0.006993
control	0.006944
homo sapiens	0.005155
united states of america	0.004785

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
vagina	1.000000
female	1.000000
united states of america	1.000000
pregnancy	1.000000
control	0.166667
LOWER IN premature birth	0.166667
premature birth	0.166667
LOWER IN control	0.166667
last trimerster	0.166667
LOWER IN first trimester	0.166667
first trimester	0.166667
LOWER IN last trimester	0.166667

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
191	amnon	decreases during pregnancy ( high in first trimester compared to last trimester in homo sapiens vagina female united states of america pregnancy )	2017-09-05	v4	No	1 / 3
191	amnon	increases during pregnancy ( high in last trimerster compared to first trimester in homo sapiens vagina female united states of america pregnancy )	2017-09-05	v4	No	1 / 7
191	amnon	dominant homo sapiens, vagina, female, united states of america, pregnancy	2017-09-05	v4	No	1 / 11
191	amnon	higher in preterm birth vaginal samples ( high in premature birth compared to control in homo sapiens vagina female united states of america pregnancy )	2017-09-05	v4	No	1 / 22
191	amnon	common homo sapiens, vagina, female, united states of america, pregnancy	2017-09-05	v4	No	1 / 31
191	amnon	lower in preterm birth vaginal samples ( high in control compared to premature birth in homo sapiens vagina female united states of america pregnancy )	2017-09-05	v4	No	1 / 37

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