dbBact

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Experiment ID: 202

Field	Description
name	variations in oral microbiota associated with oral cancer
sra	srp097643
datamd5	4ce356610bf685427203d0fc4e9d034a
mapmd5	cf9901f1f55871563ef277558bea018a

Annotations for experiment:

term enrichment score

Term	Score
mouth neoplasm	0.285714
LOWER IN mouth neoplasm	0.285714
neoplasm	0.250000
LOWER IN neoplasm	0.250000
mouth mucosa	0.181818
cancer	0.153846
LOWER IN cancer	0.153846
oral cavity	0.125000
mouth	0.076923
china	0.010753
LOWER IN control	0.010309
control	0.010309
homo sapiens	0.006897

Fraction of dbbact annotations with this term covered by the query

Term	Score
mouth neoplasm	0.333333
LOWER IN mouth neoplasm	0.333333
neoplasm	0.250000
LOWER IN neoplasm	0.250000
cancer	0.111111
LOWER IN cancer	0.111111
mouth mucosa	0.100000
oral cavity	0.066667
mouth	0.040000
china	0.005405
LOWER IN control	0.005263
control	0.005263
homo sapiens	0.003460

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
mouth mucosa	1.000000
oral cavity	1.000000
china	1.000000
mouth	1.000000
mouth neoplasm	0.250000
neoplasm	0.250000
LOWER IN control	0.250000
cancer	0.250000
control	0.250000
LOWER IN neoplasm	0.250000
LOWER IN mouth neoplasm	0.250000
LOWER IN cancer	0.250000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
mouth mucosa	1.000000
oral cavity	1.000000
china	1.000000
mouth	1.000000
mouth neoplasm	1.000000
neoplasm	1.000000
LOWER IN control	1.000000
cancer	1.000000
control	1.000000
LOWER IN neoplasm	1.000000
LOWER IN mouth neoplasm	1.000000
LOWER IN cancer	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
202	amnon	high in control compared to neoplasm mouth neoplasm cancer in homo sapiens mouth mucosa oral cavity mouth china	2017-10-01	v4	1 / 6	approved	No
202	amnon	high in mouth neoplasm neoplasm cancer compared to control in homo sapiens mouth mucosa china mouth oral cavity	2017-10-01	v4	1 / 11	approved	No
202	amnon	dominant homo sapiens, mouth mucosa, oral cavity, china, mouth	2017-10-01	v4	1 / 24	approved	No
202	amnon	common homo sapiens, mouth mucosa, oral cavity, china, mouth	2017-10-01	v4	1 / 100	approved	No

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