dbBact

×

Experiment ID: 202

Field	Description
name	variations in oral microbiota associated with oral cancer
sra	srp097643
datamd5	4ce356610bf685427203d0fc4e9d034a
mapmd5	cf9901f1f55871563ef277558bea018a

Annotations for experiment:

term enrichment score

Term	Score
neoplasm	0.333333
LOWER IN neoplasm	0.333333
mouth neoplasm	0.285714
cancer	0.285714
LOWER IN mouth neoplasm	0.285714
LOWER IN cancer	0.285714
mouth mucosa	0.200000
oral cavity	0.133333
mouth	0.076923
china	0.012821
LOWER IN control	0.011494
control	0.011364
homo sapiens	0.007634

Fraction of dbbact annotations with this term covered by the query

Term	Score
neoplasm	0.500000
LOWER IN neoplasm	0.500000
mouth neoplasm	0.333333
cancer	0.333333
LOWER IN mouth neoplasm	0.333333
LOWER IN cancer	0.333333
mouth mucosa	0.111111
oral cavity	0.071429
mouth	0.040000
china	0.006452
LOWER IN control	0.005882
control	0.005814
homo sapiens	0.003831

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
mouth mucosa	1.000000
oral cavity	1.000000
china	1.000000
mouth	1.000000
mouth neoplasm	0.250000
neoplasm	0.250000
LOWER IN control	0.250000
cancer	0.250000
control	0.250000
LOWER IN neoplasm	0.250000
LOWER IN mouth neoplasm	0.250000
LOWER IN cancer	0.250000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
202	amnon	high in control compared to neoplasm mouth neoplasm cancer in homo sapiens mouth mucosa oral cavity mouth china	2017-10-01	v4	No	1 / 6
202	amnon	high in mouth neoplasm neoplasm cancer compared to control in homo sapiens mouth mucosa china mouth oral cavity	2017-10-01	v4	No	1 / 11
202	amnon	dominant homo sapiens, mouth mucosa, oral cavity, china, mouth	2017-10-01	v4	No	1 / 24
202	amnon	common homo sapiens, mouth mucosa, oral cavity, china, mouth	2017-10-01	v4	No	1 / 100

Problems / suggestions? Please email info AT dbbact DOT org