dbBact

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Experiment ID: 202

Field	Description
name	variations in oral microbiota associated with oral cancer
sra	srp097643
datamd5	4ce356610bf685427203d0fc4e9d034a
mapmd5	cf9901f1f55871563ef277558bea018a

Annotations for experiment:

term enrichment score

Term	Score
mouth neoplasm	0.285714
LOWER IN mouth neoplasm	0.285714
neoplasm	0.250000
LOWER IN neoplasm	0.250000
mouth mucosa	0.200000
cancer	0.181818
LOWER IN cancer	0.181818
oral cavity	0.133333
mouth	0.080000
china	0.011561
LOWER IN control	0.010582
control	0.010582
homo sapiens	0.007353

Fraction of dbbact annotations with this term covered by the query

Term	Score
mouth neoplasm	0.333333
LOWER IN mouth neoplasm	0.333333
neoplasm	0.250000
LOWER IN neoplasm	0.250000
cancer	0.142857
LOWER IN cancer	0.142857
mouth mucosa	0.111111
oral cavity	0.071429
mouth	0.041667
china	0.005814
LOWER IN control	0.005405
control	0.005405
homo sapiens	0.003690

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
oral cavity	1.000000
mouth mucosa	1.000000
mouth	1.000000
china	1.000000
neoplasm	0.250000
mouth neoplasm	0.250000
cancer	0.250000
LOWER IN control	0.250000
control	0.250000
LOWER IN neoplasm	0.250000
LOWER IN mouth neoplasm	0.250000
LOWER IN cancer	0.250000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
202	amnon	high in control compared to neoplasm mouth neoplasm cancer in homo sapiens oral cavity mouth mucosa mouth china	2017-10-01	v4	No	1 / 6
202	amnon	high in neoplasm mouth neoplasm cancer compared to control in homo sapiens oral cavity mouth mucosa mouth china	2017-10-01	v4	No	1 / 11
202	amnon	dominant homo sapiens, oral cavity, mouth mucosa, mouth, china	2017-10-01	v4	No	1 / 24
202	amnon	common homo sapiens, oral cavity, mouth mucosa, mouth, china	2017-10-01	v4	No	1 / 100

Problems / suggestions? Please email info AT dbbact DOT org