Experiment ID: 214

Field Description
nameinteractions between gut microbiota, host genetics and diet in the development of metabolic syndrome
sraerp010838
sraprjeb9702
datamd566087ba7baad7a121a4df88d5d5ddf94
mapmd579aea80c522c27daffb0f889acb26896

Annotations for experiment:

term enrichment score
TermScore
strain 129s0.466667
jackson laboratories0.243902
LOWER IN c57bl/6j0.181818
mouse chow0.162791
c57bl/6j0.157895
high fat diet0.150538
nih 31m chow0.111111
LOWER IN nih-31m chow0.111111
LOWER IN strain 129s0.111111
strain s1290.111111
LOWER IN strain s1290.111111
LOWER IN taconic farms0.105263
taconic farms0.100000
LOWER IN jackson laboratories0.100000
LOWER IN high fat diet0.076923
LOWER IN mouse chow0.071429
diet0.062500
mouse0.040000
mus musculus0.035088
research facility0.020408
united states of america0.010753
feces0.010000
Fraction of dbbact annotations with this term covered by the query
TermScore
nih 31m chow0.500000
LOWER IN nih-31m chow0.500000
strain 129s0.500000
LOWER IN strain 129s0.500000
strain s1290.500000
LOWER IN strain s1290.500000
LOWER IN c57bl/6j0.333333
LOWER IN taconic farms0.333333
taconic farms0.250000
LOWER IN jackson laboratories0.250000
jackson laboratories0.200000
LOWER IN high fat diet0.100000
mouse chow0.100000
c57bl/6j0.100000
high fat diet0.090909
LOWER IN mouse chow0.083333
diet0.041667
mouse0.020408
mus musculus0.017857
research facility0.010309
united states of america0.005405
feces0.005025
Fraction of annotations for the query sequences containing the term
TermScore
mouse1.000000
mus musculus1.000000
feces1.000000
united states of america1.000000
research facility1.000000
mouse chow0.437500
high fat diet0.437500
strain 129s0.437500
c57bl/6j0.375000
jackson laboratories0.312500
diet0.125000
LOWER IN c57bl/6j0.125000
nih 31m chow0.062500
LOWER IN high fat diet0.062500
LOWER IN nih-31m chow0.062500
LOWER IN mouse chow0.062500
taconic farms0.062500
LOWER IN jackson laboratories0.062500
LOWER IN taconic farms0.062500
LOWER IN strain 129s0.062500
strain s1290.062500
LOWER IN strain s1290.062500
Exp. ID User ID Description Date Region Flag Sequences
214amnonhighfreq mouse, mus musculus, feces, united states of america, research facility, strain 129s, mouse chow2017-10-23v4No1 / 13
214amnonhighfreq mouse, mus musculus, feces, united states of america, research facility, c57bl/6j, mouse chow2017-10-23v4No1 / 14
214amnonhighfreq mouse, mus musculus, feces, united states of america, research facility, high fat diet, c57bl/6j2017-10-23v4No1 / 16
214amnonhighfreq mouse, mus musculus, feces, united states of america, research facility, strain 129s, high fat diet2017-10-23v4No1 / 18
214amnoncommon mouse, mus musculus, feces, united states of america, research facility, c57bl/6j, mouse chow2017-10-23v4No1 / 60
214amnoncommon mouse, mus musculus, feces, united states of america, research facility, high fat diet, c57bl/6j2017-10-23v4No1 / 62
214amnoncommon mouse, mus musculus, feces, united states of america, research facility, strain 129s, high fat diet2017-10-23v4No1 / 89
214amnoncommon mouse, mus musculus, feces, united states of america, research facility, strain 129s, mouse chow2017-10-23v4No1 / 95
214amnon high in c57bl/6j compared to strain s129 in mouse mus musculus feces united states of america research facility jackson laboratories high fat diet 2017-10-23v4No1 / 113
214amnon high in strain s129 compared to c57bl/6j in mouse mus musculus feces united states of america research facility jackson laboratories high fat diet 2017-10-23v4No1 / 148
214amnon high in c57bl/6j compared to strain 129s in feces united states of america research facility mus musculus mouse jackson laboratories mouse chow 2017-10-23v4No1 / 154
214amnonhigher in mice from jackson laboratories compared to taconic farms ( high in jackson laboratories compared to taconic farms in mouse mus musculus feces united states of america research facility strain 129s )2017-10-23v4No1 / 181
214amnon high in strain 129s compared to c57bl/6j in feces united states of america research facility mus musculus mouse jackson laboratories mouse chow 2017-10-23v4No1 / 207
214amnonlower in mice from jackson laboratories compared to taconic farms ( high in taconic farms compared to jackson laboratories in mouse mus musculus feces united states of america research facility strain 129s )2017-10-23v4No1 / 232
214amnon high in diet high fat diet compared to nih-31m chow mouse chow in mouse mus musculus feces united states of america research facility 2017-10-23v4No1 / 255
214amnon high in diet nih 31m chow mouse chow compared to high fat diet in mouse mus musculus feces united states of america research facility 2017-10-23v4No1 / 495

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