Experiment ID: 214

Field Description
nameinteractions between gut microbiota, host genetics and diet in the development of metabolic syndrome
sraerp010838
sraprjeb9702
datamd566087ba7baad7a121a4df88d5d5ddf94
mapmd579aea80c522c27daffb0f889acb26896

Annotations for experiment:

term enrichment score
TermScore
strain 129s0.466667
jackson laboratories0.277778
mouse chow0.194444
LOWER IN c57bl/6j0.181818
high fat diet0.177215
c57bl/6j0.171429
nih 31m chow0.111111
LOWER IN nih-31m chow0.111111
LOWER IN taconic farms0.111111
LOWER IN strain 129s0.111111
strain s1290.111111
LOWER IN strain s1290.111111
taconic farms0.105263
LOWER IN jackson laboratories0.105263
LOWER IN high fat diet0.083333
LOWER IN mouse chow0.076923
diet0.071429
mouse0.044444
mus musculus0.038462
research facility0.021978
united states of america0.012346
feces0.011628
Fraction of dbbact annotations with this term covered by the query
TermScore
nih 31m chow0.500000
LOWER IN nih-31m chow0.500000
strain 129s0.500000
LOWER IN taconic farms0.500000
LOWER IN strain 129s0.500000
strain s1290.500000
LOWER IN strain s1290.500000
taconic farms0.333333
LOWER IN jackson laboratories0.333333
LOWER IN c57bl/6j0.333333
jackson laboratories0.250000
LOWER IN high fat diet0.125000
mouse chow0.125000
high fat diet0.111111
c57bl/6j0.111111
LOWER IN mouse chow0.100000
diet0.050000
mouse0.022727
mus musculus0.019608
research facility0.011111
united states of america0.006211
feces0.005848
Fraction of annotations for the query sequences containing the term
TermScore
mouse1.000000
mus musculus1.000000
feces1.000000
united states of america1.000000
research facility1.000000
mouse chow0.437500
high fat diet0.437500
strain 129s0.437500
c57bl/6j0.375000
jackson laboratories0.312500
diet0.125000
LOWER IN c57bl/6j0.125000
nih 31m chow0.062500
LOWER IN high fat diet0.062500
LOWER IN nih-31m chow0.062500
LOWER IN mouse chow0.062500
taconic farms0.062500
LOWER IN jackson laboratories0.062500
LOWER IN taconic farms0.062500
LOWER IN strain 129s0.062500
strain s1290.062500
LOWER IN strain s1290.062500
Exp. ID User ID Description Date Sequences
214amnonhighfreq mouse, mus musculus, feces, united states of america, research facility, strain 129s, mouse chow2017-10-231 / 13
214amnonhighfreq mouse, mus musculus, feces, united states of america, research facility, c57bl/6j, mouse chow2017-10-231 / 14
214amnonhighfreq mouse, mus musculus, feces, united states of america, research facility, high fat diet, c57bl/6j2017-10-231 / 16
214amnonhighfreq mouse, mus musculus, feces, united states of america, research facility, strain 129s, high fat diet2017-10-231 / 18
214amnoncommon mouse, mus musculus, feces, united states of america, research facility, c57bl/6j, mouse chow2017-10-231 / 60
214amnoncommon mouse, mus musculus, feces, united states of america, research facility, high fat diet, c57bl/6j2017-10-231 / 62
214amnoncommon mouse, mus musculus, feces, united states of america, research facility, strain 129s, high fat diet2017-10-231 / 89
214amnoncommon mouse, mus musculus, feces, united states of america, research facility, strain 129s, mouse chow2017-10-231 / 95
214amnon high in c57bl/6j compared to strain s129 in mouse mus musculus feces united states of america research facility jackson laboratories high fat diet 2017-10-231 / 113
214amnon high in strain s129 compared to c57bl/6j in mouse mus musculus feces united states of america research facility jackson laboratories high fat diet 2017-10-231 / 148
214amnon high in c57bl/6j compared to strain 129s in feces united states of america research facility mus musculus mouse jackson laboratories mouse chow 2017-10-231 / 154
214amnonhigher in mice from jackson laboratories compared to taconic farms ( high in jackson laboratories compared to taconic farms in mouse mus musculus feces united states of america research facility strain 129s )2017-10-231 / 181
214amnon high in strain 129s compared to c57bl/6j in feces united states of america research facility mus musculus mouse jackson laboratories mouse chow 2017-10-231 / 207
214amnonlower in mice from jackson laboratories compared to taconic farms ( high in taconic farms compared to jackson laboratories in mouse mus musculus feces united states of america research facility strain 129s )2017-10-231 / 232
214amnon high in diet high fat diet compared to nih-31m chow mouse chow in mouse mus musculus feces united states of america research facility 2017-10-231 / 255
214amnon high in diet nih 31m chow mouse chow compared to high fat diet in mouse mus musculus feces united states of america research facility 2017-10-231 / 495

Problems / suggestions? Please email info AT dbbact DOT org