Experiment ID: 220

Field Description
namedietary perturbations alter the ecological significance of ingested lactobacillus plantarum in the digestive tract
sra srp057487
datamd5c7fbcd014736fece699a2a04d38281b2
mapmd5c289b3c68a9b62118ff76fa03e8d5b04

Annotations for experiment:

term enrichment score
TermScore
low fat diet0.352941
balb/c0.222222
lactobacillus plantarum0.200000
LOWER IN lactobacillus plantarum0.200000
LOWER IN low fat diet0.181818
LOWER IN probiotics0.181818
probiotics0.166667
mouse chow0.136364
high fat diet0.136364
LOWER IN high fat diet0.105263
LOWER IN mouse chow0.090909
diet0.080000
mouse0.035714
female0.032258
mus musculus0.031746
research facility0.013889
LOWER IN control0.011236
control0.011111
united states of america0.008264
feces0.006579
Fraction of dbbact annotations with this term covered by the query
TermScore
lactobacillus plantarum0.500000
LOWER IN lactobacillus plantarum0.500000
low fat diet0.333333
LOWER IN low fat diet0.333333
LOWER IN probiotics0.333333
probiotics0.250000
balb/c0.125000
LOWER IN high fat diet0.090909
mouse chow0.083333
high fat diet0.083333
LOWER IN mouse chow0.071429
diet0.041667
mouse0.018182
female0.016393
mus musculus0.016129
research facility0.006993
LOWER IN control0.005882
control0.005814
united states of america0.004149
feces0.003300
Fraction of annotations for the query sequences containing the term
TermScore
mus musculus1.000000
mouse1.000000
feces1.000000
research facility1.000000
united states of america1.000000
female1.000000
balb/c1.000000
diet1.000000
mouse chow0.375000
low fat diet0.375000
high fat diet0.375000
LOWER IN mouse chow0.125000
LOWER IN low fat diet0.125000
LOWER IN high fat diet0.125000
probiotics0.125000
lactobacillus plantarum0.125000
LOWER IN control0.125000
control0.125000
LOWER IN probiotics0.125000
LOWER IN lactobacillus plantarum0.125000
Exp. ID User ID Description Date Region Flag Sequences
220amnonlower in mice supplemented with lactobacillus plantarum probiotics ( high in control diet compared to probiotics lactobacillus plantarum in mus musculus mouse feces research facility united states of america female balb/c )2017-10-24v4No1 / 7
220amnonhigher in mice supplemented with lactobacillus plantarum probiotics ( high in probiotics diet lactobacillus plantarum compared to control in mus musculus mouse feces research facility united states of america female balb/c )2017-10-24v4No1 / 13
220amnondominant mus musculus, mouse, feces, research facility, united states of america, female, balb/c, high fat diet, diet2017-10-24v4No1 / 14
220amnondominant mus musculus, mouse, feces, research facility, united states of america, female, balb/c, diet, mouse chow, low fat diet2017-10-24v4No1 / 18
220amnon high in diet low fat diet mouse chow compared to high fat diet in mus musculus mouse feces research facility united states of america female balb/c 2017-10-24v4No1 / 113
220amnon high in diet high fat diet compared to mouse chow low fat diet in mus musculus mouse feces research facility united states of america female balb/c 2017-10-24v4No1 / 154
220amnoncommon feces, united states of america, female, research facility, mus musculus, balb/c, high fat diet, mouse, diet2017-10-24v4No1 / 241
220amnoncommon mus musculus, mouse, feces, research facility, united states of america, female, balb/c, diet, mouse chow, low fat diet2017-10-24v4No1 / 262

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