dbBact

Experiment ID: 223

Field	Description
name	regional variations in the diversity and predicted metabolic potential of benthic prokaryotes in coastal northern zhejiang, east china sea
sra	drp003373
sra	dra004709
datamd5	2138ef9a26b7ac68894df9e3385e47f0
mapmd5	9ad88e3958f5281afccd3c425c1ff18d

Annotations for experiment:

term enrichment score

Term	Score
east china sea	0.666667
LOWER IN other regions	0.470588
other regions	0.400000
yushan islands	0.181818
LOWER IN yushan islands	0.181818
sanmen bay	0.181818
hangzhou bay	0.181818
zhoushan island	0.181818
LOWER IN hangzhou bay	0.181818
LOWER IN sanmen bay	0.181818
ocean	0.117647
marine sediment	0.100000
sediment	0.064516
china	0.009615

Fraction of dbbact annotations with this term covered by the query

Term	Score
east china sea	0.500000
yushan islands	0.500000
LOWER IN other regions	0.500000
other regions	0.500000
LOWER IN yushan islands	0.500000
sanmen bay	0.500000
hangzhou bay	0.500000
zhoushan island	0.500000
LOWER IN hangzhou bay	0.500000
LOWER IN sanmen bay	0.500000
ocean	0.062500
marine sediment	0.052632
sediment	0.033333
china	0.004831

Fraction of annotations for the query sequences containing the term

Term	Score
ocean	1.000000
sediment	1.000000
marine sediment	1.000000
east china sea	1.000000
china	1.000000
LOWER IN other regions	0.444444
other regions	0.333333
yushan islands	0.111111
LOWER IN yushan islands	0.111111
sanmen bay	0.111111
hangzhou bay	0.111111
zhoushan island	0.111111
LOWER IN hangzhou bay	0.111111
LOWER IN sanmen bay	0.111111

Number of experiments associating the term to the sequence

Term	Score
ocean	1.000000
sediment	1.000000
marine sediment	1.000000
east china sea	1.000000
china	1.000000
yushan islands	1.000000
LOWER IN other regions	1.000000
other regions	1.000000
LOWER IN yushan islands	1.000000
sanmen bay	1.000000
hangzhou bay	1.000000
zhoushan island	1.000000
LOWER IN hangzhou bay	1.000000
LOWER IN sanmen bay	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
223	amnon	high in other regions compared to sanmen bay in ocean sediment marine sediment east china sea china	2017-10-26	v4	1 / 3	approved	No
223	amnon	dominant ocean, sediment, marine sediment, east china sea, china	2017-10-26	v4	1 / 8	approved	No
223	amnon	high in other regions compared to hangzhou bay in ocean sediment marine sediment east china sea china	2017-10-26	v4	1 / 21	approved	No
223	amnon	high in zhoushan island compared to other regions in ocean sediment marine sediment east china sea china	2017-10-26	v4	1 / 67	approved	No
223	amnon	high in hangzhou bay compared to other regions in ocean sediment marine sediment east china sea china	2017-10-26	v4	1 / 90	approved	No
223	amnon	high in sanmen bay compared to other regions in ocean sediment marine sediment east china sea china	2017-10-26	v4	1 / 110	approved	No
223	amnon	high in other regions compared to yushan islands in ocean sediment marine sediment east china sea china	2017-10-26	v4	1 / 302	approved	No
223	amnon	high in yushan islands compared to other regions in ocean sediment marine sediment east china sea china	2017-10-26	v4	1 / 619	approved	No
223	amnon	common ocean, sediment, marine sediment, east china sea, china	2017-10-26	v4	1 / 1311	approved	No

Problems / suggestions? Please visit the dbBact forum