Experiment ID: 236

Field Description
namemicrobial communities in sediment from zostera marina patches, but not the z. marina leaf or root microbiomes, vary in relation to distance from patch edge
srasrp092613
sra prjna350006
datamd572a0eece46b507bd69c9ac15fe5f71f8
mapmd50636a968d92e9f19193f329386bfddc2

Annotations for experiment:

term enrichment score
TermScore
bodega bay0.648649
zostera marina0.478261
marine eelgrass0.478261
ocean0.117073
LOWER IN root0.114286
root0.109589
LOWER IN marine sediment0.105263
LOWER IN leaf0.100000
LOWER IN sediment0.100000
marine sediment0.093750
mitochondrion0.076923
leaf0.075949
pacific ocean0.072727
state of california0.062338
sediment0.060000
sea water0.041237
water0.032520
Fraction of dbbact annotations with this term covered by the query
TermScore
bodega bay0.500000
zostera marina0.333333
marine eelgrass0.333333
LOWER IN marine sediment0.166667
LOWER IN leaf0.142857
LOWER IN sediment0.142857
LOWER IN root0.090909
mitochondrion0.076923
root0.066667
ocean0.062500
marine sediment0.058824
pacific ocean0.047619
leaf0.045455
sediment0.034483
state of california0.032258
sea water0.023810
water0.018182
Fraction of annotations for the query sequences containing the term
TermScore
ocean0.923077
state of california0.923077
bodega bay0.923077
zostera marina0.846154
marine eelgrass0.846154
root0.307692
sediment0.230769
marine sediment0.230769
leaf0.230769
LOWER IN root0.153846
water0.153846
sea water0.153846
pacific ocean0.153846
LOWER IN leaf0.076923
LOWER IN sediment0.076923
LOWER IN marine sediment0.076923
mitochondrion0.076923
Number of experiments associating the term to the sequence
TermScore
sediment1.000000
marine sediment1.000000
LOWER IN root1.000000
ocean1.000000
zostera marina1.000000
state of california1.000000
bodega bay1.000000
marine eelgrass1.000000
water1.000000
sea water1.000000
pacific ocean1.000000
root1.000000
LOWER IN leaf1.000000
LOWER IN sediment1.000000
LOWER IN marine sediment1.000000
leaf1.000000
mitochondrion1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
236amnonmarine eelgrass mitochondria (other mitochondrion, zostera marina, marine eelgrass)2017-11-07v41 / 1approvedNo
236amnondominant ocean, leaf, zostera marina, state of california, bodega bay, marine eelgrass2017-11-07v41 / 4approvedNo
236amnondominant ocean, sediment, marine sediment, zostera marina, state of california, bodega bay, marine eelgrass2017-11-07v41 / 5approvedNo
236amnondominant ocean, zostera marina, state of california, bodega bay, marine eelgrass, root2017-11-07v41 / 8approvedNo
236amnondominant ocean, water, sea water, state of california, pacific ocean, bodega bay2017-11-07v41 / 21approvedNo
236amnon high in leaf compared to root in ocean zostera marina state of california bodega bay marine eelgrass 2017-11-07v41 / 287approvedNo
236amnoncommon ocean, zostera marina, state of california, bodega bay, marine eelgrass, root2017-11-07v41 / 483approvedNo
236amnoncommon ocean, leaf, zostera marina, state of california, bodega bay, marine eelgrass2017-11-07v41 / 505approvedNo
236amnon high in root compared to sediment marine sediment in ocean zostera marina state of california bodega bay marine eelgrass 2017-11-07v41 / 674approvedNo
236amnon high in root compared to leaf in ocean zostera marina state of california bodega bay marine eelgrass 2017-11-07v41 / 819approvedNo
236amnoncommon ocean, water, sea water, state of california, pacific ocean, bodega bay2017-11-07v41 / 1156approvedNo
236amnoncommon ocean, sediment, marine sediment, zostera marina, state of california, bodega bay, marine eelgrass2017-11-07v41 / 1904approvedNo
236amnon high in sediment marine sediment compared to root in ocean zostera marina state of california bodega bay marine eelgrass 2017-11-07v41 / 2745approvedNo

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