Experiment ID: 236

Field Description
namemicrobial communities in sediment from zostera marina patches, but not the z. marina leaf or root microbiomes, vary in relation to distance from patch edge
srasrp092613
sra prjna350006
datamd572a0eece46b507bd69c9ac15fe5f71f8
mapmd50636a968d92e9f19193f329386bfddc2

Annotations for experiment:

term enrichment score
TermScore
bodega bay0.648649
zostera marina0.478261
marine eelgrass0.478261
ocean0.117073
LOWER IN root0.114286
root0.109589
LOWER IN marine sediment0.105263
LOWER IN leaf0.100000
LOWER IN sediment0.100000
marine sediment0.098361
state of california0.083045
leaf0.082192
pacific ocean0.081633
mitochondrion0.080000
sediment0.068182
sea water0.049383
water0.032520
Fraction of dbbact annotations with this term covered by the query
TermScore
bodega bay0.500000
zostera marina0.333333
marine eelgrass0.333333
LOWER IN marine sediment0.166667
LOWER IN leaf0.142857
LOWER IN sediment0.142857
LOWER IN root0.090909
mitochondrion0.083333
root0.066667
ocean0.062500
marine sediment0.062500
pacific ocean0.055556
leaf0.050000
state of california0.043478
sediment0.040000
sea water0.029412
water0.018182
Fraction of annotations for the query sequences containing the term
TermScore
state of california0.923077
bodega bay0.923077
ocean0.923077
zostera marina0.846154
marine eelgrass0.846154
root0.307692
sediment0.230769
marine sediment0.230769
leaf0.230769
LOWER IN root0.153846
pacific ocean0.153846
water0.153846
sea water0.153846
LOWER IN leaf0.076923
LOWER IN sediment0.076923
LOWER IN marine sediment0.076923
mitochondrion0.076923
Exp. ID User ID Description Date Region Flag Sequences
236amnonmarine eelgrass mitochondria (other zostera marina, mitochondrion, marine eelgrass)2017-11-07v4No1 / -7
236amnondominant state of california, bodega bay, ocean, zostera marina, marine eelgrass, leaf2017-11-07v4No1 / -4
236amnondominant state of california, bodega bay, ocean, zostera marina, marine eelgrass, sediment, marine sediment2017-11-07v4No1 / -3
236amnondominant state of california, bodega bay, ocean, zostera marina, marine eelgrass, root2017-11-07v4No1 / 0
236amnondominant ocean, pacific ocean, state of california, bodega bay, water, sea water2017-11-07v4No1 / 13
236amnon high in leaf compared to root in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-07v4No1 / 279
236amnoncommon state of california, bodega bay, ocean, zostera marina, marine eelgrass, root2017-11-07v4No1 / 475
236amnoncommon state of california, bodega bay, ocean, zostera marina, marine eelgrass, leaf2017-11-07v4No1 / 497
236amnon high in root compared to sediment marine sediment in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-07v4No1 / 666
236amnon high in root compared to leaf in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-07v4No1 / 811
236amnoncommon ocean, state of california, pacific ocean, bodega bay, water, sea water2017-11-07v4No1 / 1148
236amnoncommon state of california, bodega bay, ocean, zostera marina, marine eelgrass, sediment, marine sediment2017-11-07v4No1 / 1896
236amnon high in sediment marine sediment compared to root in state of california bodega bay ocean zostera marina marine eelgrass 2017-11-07v4No1 / 2737

Problems / suggestions? Please email info AT dbbact DOT org