dbBact

×

Experiment ID: 240

Field	Description
name	the dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.
sra	prjna231909
http	https://pubs.broadinstitute.org/diabimmune/data/9
datamd5	0d09d819260286393e1f93f3127d2e7d
mapmd5	17bced15922fe5893c1576703b1a5d07

Annotations for experiment:

term enrichment score

Term	Score
age < 3 years	0.400000
LOWER IN age <1 year	0.333333
LOWER IN age > 1 year	0.333333
age > 1 year	0.285714
finland	0.250000
age < 1 year	0.200000
infant	0.090909
age	0.086957
homo sapiens	0.008475
feces	0.007273

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN age <1 year	0.500000
LOWER IN age > 1 year	0.500000
age > 1 year	0.333333
age < 3 years	0.333333
age < 1 year	0.166667
finland	0.142857
infant	0.047619
age	0.047619
homo sapiens	0.004255
feces	0.003650

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
feces	1.000000
infant	1.000000
finland	1.000000
age	0.500000
age < 3 years	0.500000
age > 1 year	0.250000
LOWER IN age <1 year	0.250000
age < 1 year	0.250000
LOWER IN age > 1 year	0.250000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
240	amnon	high freq. in infants age <3 years (dominant homo sapiens, feces, finland, infant, age < 3 years)	2017-11-12	v4	No	1 / 13
240	amnon	higher in infants age<1 year compared to 1-3 years in baby feces ( high in age age < 1 year compared to age > 1 year in homo sapiens feces infant finland )	2017-11-12	v4	No	1 / 27
240	amnon	common in infants age <3 years (common homo sapiens, feces, finland, infant, age < 3 years)	2017-11-12	v4	No	1 / 28
240	amnon	lower in infants age<1 year compared to 1-3 years in baby feces ( high in age age > 1 year compared to age <1 year in homo sapiens feces infant finland )	2017-11-12	v4	No	1 / 559

Problems / suggestions? Please email info AT dbbact DOT org