Experiment ID: 241

Field Description
name variation in microbiome lps immunogenicity contributes to autoimmunity in humans
sraprjna290380
httphttps://pubs.broadinstitute.org/diabimmune/three-country-cohort
datamd525c60c73729865b33ab63d304725bd06
mapmd5746eae02d250f4243ccc00206f0137a9

Annotations for experiment:

term enrichment score
TermScore
age < 3 years0.480000
estonia0.363636
russia0.266667
LOWER IN russia0.222222
LOWER IN estonia0.222222
finland0.190476
LOWER IN finland0.181818
age 1-3 years0.125000
LOWER IN age 1-3 years0.125000
LOWER IN age < 1 year0.111111
infant0.111111
age < 1 year0.105263
age0.076923
homo sapiens0.013986
feces0.010582
Fraction of dbbact annotations with this term covered by the query
TermScore
age 1-3 years0.500000
estonia0.500000
LOWER IN russia0.500000
LOWER IN estonia0.500000
LOWER IN age 1-3 years0.500000
age < 3 years0.333333
russia0.250000
LOWER IN finland0.250000
LOWER IN age < 1 year0.250000
age < 1 year0.200000
finland0.142857
infant0.058824
age0.052632
homo sapiens0.007042
feces0.005319
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
feces1.000000
infant1.000000
age < 3 years0.857143
russia0.285714
estonia0.285714
finland0.285714
LOWER IN finland0.142857
age0.142857
LOWER IN russia0.142857
LOWER IN estonia0.142857
age 1-3 years0.071429
LOWER IN age < 1 year0.071429
age < 1 year0.071429
LOWER IN age 1-3 years0.071429
Exp. ID User ID Description Date Sequences
241amnonhigher in babies age <1 year compared to age 1-3 years ( high in age < 1 year age compared to age 1-3 years in homo sapiens feces infant )2017-11-131 / 13
241amnonhigh freq. in babies age < 3 years in finland (highfreq homo sapiens, feces, infant, age < 3 years, finland)2017-11-131 / 21
241amnonhigh freq. in babies age < 3 years in estonia (highfreq homo sapiens, feces, infant, age < 3 years, estonia)2017-11-131 / 23
241amnoncommon in babies age < 3 years in finland (common homo sapiens, feces, infant, age < 3 years, finland)2017-11-131 / 23
241amnonhigh freq. in babies age < 3 years in russia (highfreq homo sapiens, feces, infant, russia, age < 3 years)2017-11-131 / 23
241amnoncommon in babies age < 3 years in estonia (common homo sapiens, feces, infant, age < 3 years, estonia)2017-11-131 / 24
241amnoncommon in babies age < 3 years in russia (common homo sapiens, feces, infant, russia, age < 3 years)2017-11-131 / 44
241amnonhigher in babies from finland compared to estonia ( high in finland compared to estonia in homo sapiens feces infant age < 3 years )2017-11-131 / 45
241amnonhigher in babies from russia compared to estonia ( high in russia compared to estonia in homo sapiens feces infant age < 3 years )2017-11-131 / 146
241amnonlower in babies from russia compared to finland ( high in finland compared to russia in homo sapiens feces infant age < 3 years )2017-11-131 / 148
241amnonlower in babies from finland compared to estonia ( high in estonia compared to finland in homo sapiens feces infant age < 3 years )2017-11-131 / 157
241amnonlower in babies from russia compared to estonia ( high in estonia compared to russia in homo sapiens feces infant age < 3 years )2017-11-131 / 169
241amnonlower in babies age <1 year compared to age 1-3 years ( high in age age 1-3 years compared to age < 1 year in homo sapiens feces infant )2017-11-131 / 173
241amnonhigher in babies from russia compared to finland ( high in russia compared to finland in homo sapiens feces infant age < 3 years )2017-11-131 / 306

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