Experiment ID: 241

Field Description
name variation in microbiome lps immunogenicity contributes to autoimmunity in humans
sraprjna290380
httphttps://pubs.broadinstitute.org/diabimmune/three-country-cohort
datamd525c60c73729865b33ab63d304725bd06
mapmd5746eae02d250f4243ccc00206f0137a9

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
age < 3 years0.333333
estonia0.333333
LOWER IN estonia0.333333
age 1-3 years0.250000
LOWER IN age 1-3 years0.250000
2-year-old human stage0.166667
LOWER IN 2-year-old human stage0.166667
LOWER IN finland0.142857
finland0.142857
russia0.100000
LOWER IN russia0.100000
1-year-old human stage0.066667
LOWER IN 1-year-old human stage0.066667
LOWER IN under-1-year-old human stage0.052632
under-1-year-old human stage0.052632
age0.047619
infant0.038462
homo sapiens0.003690
feces0.003185
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
homo sapiens1.000000
infant1.000000
age < 3 years0.857143
russia0.285714
estonia0.285714
finland0.285714
LOWER IN finland0.142857
age0.142857
LOWER IN russia0.142857
LOWER IN estonia0.142857
age 1-3 years0.071429
2-year-old human stage0.071429
1-year-old human stage0.071429
LOWER IN under-1-year-old human stage0.071429
under-1-year-old human stage0.071429
LOWER IN age 1-3 years0.071429
LOWER IN 2-year-old human stage0.071429
LOWER IN 1-year-old human stage0.071429
Exp. ID User ID Description Date Region Flag Sequences
241amnonhigher in babies age <1 year compared to age 1-3 years ( high in age under-1-year-old human stage compared to age 1-3 years 2-year-old human stage 1-year-old human stage in feces homo sapiens infant )2017-11-13v4No1 / 13
241amnonhigh freq. in babies age < 3 years in finland (dominant feces, homo sapiens, infant, finland, age < 3 years)2017-11-13v4No1 / 21
241amnonhigh freq. in babies age < 3 years in estonia (dominant feces, homo sapiens, infant, estonia, age < 3 years)2017-11-13v4No1 / 23
241amnoncommon in babies age < 3 years in finland (common feces, homo sapiens, infant, finland, age < 3 years)2017-11-13v4No1 / 23
241amnonhigh freq. in babies age < 3 years in russia (dominant feces, homo sapiens, infant, russia, age < 3 years)2017-11-13v4No1 / 23
241amnoncommon in babies age < 3 years in estonia (common feces, homo sapiens, infant, estonia, age < 3 years)2017-11-13v4No1 / 24
241amnoncommon in babies age < 3 years in russia (common feces, homo sapiens, infant, russia, age < 3 years)2017-11-13v4No1 / 44
241amnonhigher in babies from finland compared to estonia ( high in finland compared to estonia in feces homo sapiens infant age < 3 years )2017-11-13v4No1 / 45
241amnonhigher in babies from russia compared to estonia ( high in russia compared to estonia in feces homo sapiens infant age < 3 years )2017-11-13v4No1 / 146
241amnonlower in babies from russia compared to finland ( high in finland compared to russia in feces homo sapiens infant age < 3 years )2017-11-13v4No1 / 148
241amnonlower in babies from finland compared to estonia ( high in estonia compared to finland in feces homo sapiens infant age < 3 years )2017-11-13v4No1 / 157
241amnonlower in babies from russia compared to estonia ( high in estonia compared to russia in feces homo sapiens infant age < 3 years )2017-11-13v4No1 / 169
241amnonlower in babies age <1 year compared to age 1-3 years ( high in age age 1-3 years 2-year-old human stage 1-year-old human stage compared to under-1-year-old human stage in feces homo sapiens infant )2017-11-13v4No1 / 173
241amnonhigher in babies from russia compared to finland ( high in russia compared to finland in feces homo sapiens infant age < 3 years )2017-11-13v4No1 / 306

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