Experiment ID: 256

Field Description
namecomposition and diversity of mucosa-associated microbiota along the entire length of the pig gastrointestinal tract; dietary influences
sraerp016424
qiita prjeb14756
datamd5647b20727efd574a8d836a6f50323da2
mapmd58e233c3861f20390986d9b222168305f

Annotations for experiment:

term enrichment score
TermScore
left colon0.260870
right colon0.230769
jejunum0.230769
LOWER IN left colon0.210526
LOWER IN jejunum0.190476
LOWER IN right colon0.190476
gastrointestinal system0.160000
sucram0.153846
LOWER IN sucram0.153846
LOWER IN standard feed0.142857
standard feed0.142857
duodenum0.136364
intestinal contents0.125000
LOWER IN intestinal contents0.125000
LOWER IN duodenum0.121212
sus scrofa0.117647
pig0.117647
ileum0.106667
united kingdom0.083333
LOWER IN ileum0.074074
LOWER IN mucosa0.064516
mucosa0.064516
caecum0.052356
diet0.051948
LOWER IN caecum0.048193
Fraction of dbbact annotations with this term covered by the query
TermScore
sucram0.500000
LOWER IN sucram0.500000
LOWER IN standard feed0.333333
standard feed0.333333
left colon0.250000
LOWER IN left colon0.250000
right colon0.200000
LOWER IN jejunum0.200000
jejunum0.200000
LOWER IN right colon0.200000
intestinal contents0.200000
LOWER IN intestinal contents0.200000
gastrointestinal system0.142857
LOWER IN duodenum0.090909
duodenum0.090909
LOWER IN ileum0.062500
sus scrofa0.062500
pig0.062500
ileum0.062500
LOWER IN mucosa0.050000
mucosa0.050000
united kingdom0.043478
diet0.030303
caecum0.027778
LOWER IN caecum0.027778
Fraction of annotations for the query sequences containing the term
TermScore
sus scrofa1.000000
pig1.000000
united kingdom1.000000
caecum0.454545
ileum0.363636
left colon0.272727
right colon0.272727
duodenum0.272727
jejunum0.272727
LOWER IN duodenum0.181818
LOWER IN jejunum0.181818
LOWER IN caecum0.181818
LOWER IN left colon0.181818
LOWER IN right colon0.181818
diet0.181818
gastrointestinal system0.181818
LOWER IN ileum0.090909
sucram0.090909
LOWER IN standard feed0.090909
standard feed0.090909
LOWER IN sucram0.090909
intestinal contents0.090909
LOWER IN mucosa0.090909
mucosa0.090909
LOWER IN intestinal contents0.090909
Exp. ID User ID Description Date Region Flag Sequences
256amnonhigher in illeum compared to other gi tract locations in pigs ( high in ileum compared to caecum duodenum jejunum left colon right colon in sus scrofa pig united kingdom )2017-11-26v4No1 / 1
256amnondominant duodenum, jejunum, ileum, sus scrofa, pig, united kingdom2017-11-26v4No1 / 10
256amnondominant caecum, left colon, right colon, sus scrofa, pig, united kingdom2017-11-26v4No1 / 19
256amnonlower in intestinal contents compared to mucosal scraping in pig caecum ( high in mucosa compared to intestinal contents in caecum sus scrofa pig united kingdom )2017-11-26v4No1 / 50
256amnonhigher in intestinal contents compared to mucosal scraping in pig caecum ( high in intestinal contents compared to mucosa in caecum sus scrofa pig united kingdom )2017-11-26v4No1 / 103
256amnonhigher in control diet compared to diet enriched with sucram in pig gut ( high in diet standard feed compared to sucram in gastrointestinal system sus scrofa pig united kingdom )2017-11-26v4No1 / 109
256amnonlower in control diet compared to diet enriched with sucram in pig gut ( high in diet sucram compared to standard feed in gastrointestinal system sus scrofa pig united kingdom )2017-11-26v4No1 / 227
256amnoncommon duodenum, jejunum, ileum, sus scrofa, pig, united kingdom2017-11-26v4No1 / 380
256amnonhigher in small intestine compared to colon in pigs ( high in duodenum jejunum ileum compared to caecum left colon right colon in sus scrofa pig united kingdom )2017-11-26v4No1 / 387
256amnoncommon caecum, left colon, right colon, sus scrofa, pig, united kingdom2017-11-26v4No1 / 490
256amnonlower in small intestine compared to colon in pigs ( high in caecum left colon right colon compared to duodenum jejunum ileum in sus scrofa pig united kingdom )2017-11-26v4No1 / 740

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