Experiment ID: 256

Field Description
namecomposition and diversity of mucosa-associated microbiota along the entire length of the pig gastrointestinal tract; dietary influences
sraerp016424
qiita prjeb14756
datamd5647b20727efd574a8d836a6f50323da2
mapmd58e233c3861f20390986d9b222168305f

Annotations for experiment:

term enrichment score
TermScore
jejunum0.300000
left colon0.260870
LOWER IN jejunum0.235294
right colon0.230769
LOWER IN left colon0.210526
gastrointestinal system0.210526
sus scrofa0.200000
pig0.200000
united kingdom0.200000
LOWER IN right colon0.190476
ileum0.186047
duodenum0.157895
sucram0.153846
LOWER IN standard feed0.153846
LOWER IN sucram0.153846
standard feed0.153846
intestinal contents0.153846
LOWER IN intestinal contents0.153846
LOWER IN duodenum0.148148
LOWER IN mucosa0.142857
mucosa0.133333
LOWER IN caecum0.129032
LOWER IN ileum0.105263
caecum0.082645
diet0.067797
Fraction of dbbact annotations with this term covered by the query
TermScore
sucram0.500000
LOWER IN standard feed0.500000
LOWER IN sucram0.500000
standard feed0.500000
intestinal contents0.500000
LOWER IN intestinal contents0.500000
LOWER IN jejunum0.333333
jejunum0.333333
LOWER IN mucosa0.333333
left colon0.250000
LOWER IN left colon0.250000
gastrointestinal system0.250000
mucosa0.250000
right colon0.200000
LOWER IN right colon0.200000
LOWER IN duodenum0.125000
LOWER IN ileum0.125000
ileum0.125000
sus scrofa0.111111
pig0.111111
united kingdom0.111111
duodenum0.111111
LOWER IN caecum0.100000
caecum0.045455
diet0.041667
Fraction of annotations for the query sequences containing the term
TermScore
sus scrofa1.000000
pig1.000000
united kingdom1.000000
caecum0.454545
ileum0.363636
right colon0.272727
left colon0.272727
duodenum0.272727
jejunum0.272727
LOWER IN duodenum0.181818
LOWER IN jejunum0.181818
LOWER IN caecum0.181818
LOWER IN right colon0.181818
LOWER IN left colon0.181818
gastrointestinal system0.181818
diet0.181818
LOWER IN ileum0.090909
sucram0.090909
LOWER IN standard feed0.090909
LOWER IN sucram0.090909
standard feed0.090909
LOWER IN mucosa0.090909
intestinal contents0.090909
mucosa0.090909
LOWER IN intestinal contents0.090909
Exp. ID User ID Description Date Region Flag Sequences
256amnonhigher in illeum compared to other gi tract locations in pigs ( high in ileum compared to duodenum jejunum caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v4No1 / 1
256amnonhighfreq sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v4No1 / 10
256amnonhighfreq sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v4No1 / 19
256amnonlower in intestinal contents compared to mucosal scraping in pig caecum ( high in mucosa compared to intestinal contents in sus scrofa pig caecum united kingdom )2017-11-26v4No1 / 50
256amnonhigher in intestinal contents compared to mucosal scraping in pig caecum ( high in intestinal contents compared to mucosa in sus scrofa pig caecum united kingdom )2017-11-26v4No1 / 103
256amnonhigher in control diet compared to diet enriched with sucram in pig gut ( high in diet standard feed compared to sucram in gastrointestinal system sus scrofa pig united kingdom )2017-11-26v4No1 / 109
256amnonlower in control diet compared to diet enriched with sucram in pig gut ( high in diet sucram compared to standard feed in sus scrofa pig gastrointestinal system united kingdom )2017-11-26v4No1 / 227
256amnoncommon sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v4No1 / 380
256amnonhigher in small intestine compared to colon in pigs ( high in duodenum jejunum ileum compared to caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v4No1 / 387
256amnoncommon sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v4No1 / 490
256amnonlower in small intestine compared to colon in pigs ( high in caecum right colon left colon compared to duodenum jejunum ileum in sus scrofa pig united kingdom )2017-11-26v4No1 / 740

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