Experiment ID: 266

Field Description
namehost genotype and age shape the leaf and root microbiomes of a wild perennial plant
sra prjeb10570
datamd56cd1304dd6ebcca9f30d99cce455f5d7
mapmd504f9b105e713231cb2389d4dd6e0cb5a

Annotations for experiment:

term enrichment score
TermScore
state of idaho0.481928
boechera stricta0.465116
ph 5.50.258065
brassicaceae0.183206
ph 60.170213
ph 6.50.121212
root0.109375
fungal cell0.080000
leaf0.069767
pathogen0.055556
LOWER IN root0.052632
LOWER IN leaf0.045455
plant0.043557
soil0.019361
united states of america0.007688
Fraction of dbbact annotations with this term covered by the query
TermScore
boechera stricta0.500000
ph 5.50.500000
fungal cell0.500000
state of idaho0.333333
ph 6.50.200000
ph 60.166667
brassicaceae0.111111
pathogen0.076923
root0.066667
LOWER IN root0.066667
LOWER IN leaf0.047619
leaf0.047619
plant0.022727
soil0.009901
united states of america0.003861
Fraction of annotations for the query sequences containing the term
TermScore
united states of america0.869565
state of idaho0.869565
brassicaceae0.521739
plant0.521739
boechera stricta0.434783
soil0.434783
root0.304348
ph 5.50.173913
ph 60.173913
leaf0.130435
ph 6.50.086957
LOWER IN leaf0.043478
LOWER IN root0.043478
pathogen0.043478
fungal cell0.043478
Number of experiments associating the term to the sequence
TermScore
brassicaceae1.000000
boechera stricta1.000000
plant1.000000
united states of america1.000000
state of idaho1.000000
LOWER IN leaf1.000000
root1.000000
soil1.000000
ph 5.51.000000
ph 61.000000
leaf1.000000
LOWER IN root1.000000
ph 6.51.000000
pathogen1.000000
fungal cell1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
266amnonplant mitochondria (other plant, brassicaceae)2017-12-18v41 / 1approvedNo
266amnonbrassicaceae fungal pathogen (other pathogen, fungal cell)2017-12-18v41 / 5approvedNo
266amnonhigh freq. in soil from JAM garden (dominant soil, united states of america, state of idaho, ph 5.5)2017-12-18v41 / 6approvedNo
266amnonhigh freq. in roots in SIL garden (dominant brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 6approvedNo
266amnonhigh freq. in soil from MIL garden (dominant soil, united states of america, state of idaho, ph 6.5)2017-12-18v41 / 8approvedNo
266amnonhigh freq. in soil from PAR garden (dominant soil, united states of america, state of idaho, ph 5.5)2017-12-18v41 / 8approvedNo
266amnonplant DNA (other plant, brassicaceae)2017-12-18v41 / 8approvedNo
266amnonhigh freq. in soil from SIL garden (dominant soil, united states of america, state of idaho, ph 6)2017-12-18v41 / 8approvedNo
266amnonhigh freq. in soil from MAH garden (dominant soil, united states of america, state of idaho, ph 6)2017-12-18v41 / 11approvedNo
266amnonhigh freq. in roots in JAM garden (dominant brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 12approvedNo
266amnonhigh freq. in roots in MAH garden (dominant brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 12approvedNo
266amnonhigh freq. on perennial plant leaves (dominant brassicaceae, boechera stricta, plant, leaf, united states of america, state of idaho)2017-12-19v41 / 17approvedNo
266amnoncommon on perennial plant leaves (common brassicaceae, boechera stricta, plant, leaf, united states of america, state of idaho)2017-12-19v41 / 156approvedNo
266amnoncommon in roots in JAM garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 843approvedNo
266amnoncommon in soil from MIL garden (common soil, united states of america, state of idaho, ph 6.5)2017-12-18v41 / 980approvedNo
266amnoncommon in soil from PAR garden (common soil, united states of america, state of idaho, ph 5.5)2017-12-18v41 / 1032approvedNo
266amnoncommon in roots in MAH garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 1110approvedNo
266amnon high in leaf compared to root in brassicaceae boechera stricta plant united states of america state of idaho 2017-12-19v41 / 1175approvedNo
266amnonCommon in soil from MAH garden (common soil, united states of america, state of idaho, ph 6)2017-12-18v41 / 1299approvedNo
266amnoncommon in soil from SIL garden (common soil, united states of america, state of idaho, ph 6)2017-12-18v41 / 1389approvedNo
266amnoncoomon in roots in SIL garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 1399approvedNo
266amnoncommon in soil from JAM garden (common soil, united states of america, state of idaho, ph 5.5)2017-12-18v41 / 1456approvedNo
266amnon high in root compared to leaf in brassicaceae boechera stricta plant united states of america state of idaho 2017-12-19v41 / 5886approvedNo

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