Experiment ID: 266

Field Description
namehost genotype and age shape the leaf and root microbiomes of a wild perennial plant
sra prjeb10570
datamd56cd1304dd6ebcca9f30d99cce455f5d7
mapmd504f9b105e713231cb2389d4dd6e0cb5a

Annotations for experiment:

term enrichment score
TermScore
state of idaho0.481928
boechera stricta0.465116
ph 5.50.258065
brassicaceae0.201681
ph 60.170213
ph 6.50.121212
fungal cell0.080000
leaf0.072289
pathogen0.055556
LOWER IN leaf0.046512
plant0.044527
soil0.019743
united states of america0.008060
root0.002902
LOWER IN root0.002821
Fraction of dbbact annotations with this term covered by the query
TermScore
boechera stricta0.500000
ph 5.50.500000
fungal cell0.500000
state of idaho0.333333
ph 6.50.200000
ph 60.166667
brassicaceae0.125000
pathogen0.076923
LOWER IN leaf0.050000
leaf0.050000
plant0.023256
soil0.010101
united states of america0.004049
root0.001458
LOWER IN root0.001458
Fraction of annotations for the query sequences containing the term
TermScore
united states of america0.869565
state of idaho0.869565
plant0.521739
brassicaceae0.521739
boechera stricta0.434783
soil0.434783
root0.304348
ph 5.50.173913
ph 60.173913
leaf0.130435
ph 6.50.086957
LOWER IN leaf0.043478
LOWER IN root0.043478
fungal cell0.043478
pathogen0.043478
Exp. ID User ID Description Date Region Flag Sequences
266amnonplant mitochondria (other plant, brassicaceae)2017-12-18v4No1 / 1
266amnonbrassicaceae fungal pathogen (other fungal cell, pathogen)2017-12-18v4No1 / 5
266amnonhigh freq. in roots in SIL garden (dominant united states of america, state of idaho, plant, brassicaceae, boechera stricta, root)2017-12-19v4No1 / 6
266amnonhigh freq. in soil from JAM garden (dominant united states of america, soil, state of idaho, ph 5.5)2017-12-18v4No1 / 6
266amnonplant DNA (other plant, brassicaceae)2017-12-18v4No1 / 8
266amnonhigh freq. in soil from SIL garden (dominant united states of america, soil, state of idaho, ph 6)2017-12-18v4No1 / 8
266amnonhigh freq. in soil from PAR garden (dominant united states of america, soil, state of idaho, ph 5.5)2017-12-18v4No1 / 8
266amnonhigh freq. in soil from MIL garden (dominant united states of america, soil, state of idaho, ph 6.5)2017-12-18v4No1 / 8
266amnonhigh freq. in soil from MAH garden (dominant united states of america, soil, state of idaho, ph 6)2017-12-18v4No1 / 11
266amnonhigh freq. in roots in MAH garden (dominant united states of america, state of idaho, plant, brassicaceae, boechera stricta, root)2017-12-19v4No1 / 12
266amnonhigh freq. in roots in JAM garden (dominant united states of america, state of idaho, plant, brassicaceae, boechera stricta, root)2017-12-19v4No1 / 12
266amnonhigh freq. on perennial plant leaves (dominant united states of america, leaf, state of idaho, plant, brassicaceae, boechera stricta)2017-12-19v4No1 / 17
266amnoncommon on perennial plant leaves (common united states of america, leaf, state of idaho, plant, brassicaceae, boechera stricta)2017-12-19v4No1 / 156
266amnoncommon in roots in JAM garden (common united states of america, state of idaho, plant, brassicaceae, boechera stricta, root)2017-12-19v4No1 / 843
266amnoncommon in soil from MIL garden (common united states of america, soil, state of idaho, ph 6.5)2017-12-18v4No1 / 980
266amnoncommon in soil from PAR garden (common united states of america, soil, state of idaho, ph 5.5)2017-12-18v4No1 / 1032
266amnoncommon in roots in MAH garden (common united states of america, state of idaho, plant, brassicaceae, boechera stricta, root)2017-12-19v4No1 / 1110
266amnon high in leaf compared to root in united states of america state of idaho plant brassicaceae boechera stricta 2017-12-19v4No1 / 1175
266amnonCommon in soil from MAH garden (common united states of america, soil, state of idaho, ph 6)2017-12-18v4No1 / 1299
266amnoncommon in soil from SIL garden (common united states of america, soil, state of idaho, ph 6)2017-12-18v4No1 / 1389
266amnoncoomon in roots in SIL garden (common united states of america, state of idaho, plant, brassicaceae, boechera stricta, root)2017-12-19v4No1 / 1399
266amnoncommon in soil from JAM garden (common united states of america, soil, state of idaho, ph 5.5)2017-12-18v4No1 / 1456
266amnon high in root compared to leaf in united states of america state of idaho plant brassicaceae boechera stricta 2017-12-19v4No1 / 5886

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