dbBact

×

Experiment ID: 277

Field	Description
name	comparing the healthy nose and nasopharynx microbiota reveals continuity as well as niche-specificity
sra	prjeb23057
datamd5	805d9dd10be0e7e136581b80a4c1c1e4
mapmd5	2818b5039d33f87a935fe4c74382f6a0

Annotations for experiment:

term enrichment score

Term	Score
belgium	0.218182
contaminant	0.166667
nasopharynx	0.162162
nasal cavity	0.150000
pair of nares	0.122449
LOWER IN nasopharynx	0.117647
LOWER IN nasal cavity	0.111111
LOWER IN pair of nares	0.095238
adult	0.011483
homo sapiens	0.007348

Fraction of dbbact annotations with this term covered by the query

Term	Score
contaminant	0.200000
belgium	0.125000
LOWER IN nasopharynx	0.100000
nasopharynx	0.100000
nasal cavity	0.090909
LOWER IN nasal cavity	0.090909
pair of nares	0.071429
LOWER IN pair of nares	0.071429
adult	0.005780
homo sapiens	0.003690

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	0.857143
adult	0.857143
belgium	0.857143
nasal cavity	0.428571
pair of nares	0.428571
nasopharynx	0.428571
LOWER IN nasopharynx	0.142857
LOWER IN nasal cavity	0.142857
LOWER IN pair of nares	0.142857
contaminant	0.142857
contamination	0.142857

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
277	amnon	higher in blanks compared to nasopharynx (contamination)	2019-12-05	v4	No	1 / 5
277	amnon	high in nasopharynx compared to nasal cavity pair of nares in homo sapiens adult belgium	2018-01-23	v4	No	1 / 7
277	amnon	dominant homo sapiens, nasal cavity, pair of nares, adult, belgium	2018-01-23	v4	No	1 / 14
277	amnon	dominant homo sapiens, nasopharynx, adult, belgium	2018-01-23	v4	No	1 / 17
277	amnon	common homo sapiens, nasopharynx, adult, belgium	2018-01-23	v4	No	1 / 20
277	amnon	common homo sapiens, nasal cavity, pair of nares, adult, belgium	2018-01-23	v4	No	1 / 37
277	amnon	high in nasal cavity pair of nares compared to nasopharynx in homo sapiens adult belgium	2018-01-23	v4	No	1 / 86

Problems / suggestions? Please email info AT dbbact DOT org