dbBact

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Experiment ID: 290

Field	Description
name	recent urbanization in china is correlated with a westernized microbiome encoding increased virulence and antibiotic resistance genes
sra	prjna349463
datamd5	2fcbe2fe3e5b9c35d226f5bc5b378a95
mapmd5	acc40cf0540c0bed2dda190a835c3686

Annotations for experiment:

term enrichment score

Term	Score
small village	0.333333
LOWER IN small village	0.200000
rural community	0.166667
LOWER IN rural community	0.166667
LOWER IN city	0.153846
city	0.095238
china	0.015748
adult	0.014085
homo sapiens	0.008511
feces	0.007299

Fraction of dbbact annotations with this term covered by the query

Term	Score
small village	0.250000
LOWER IN small village	0.250000
LOWER IN rural community	0.166667
LOWER IN city	0.142857
rural community	0.100000
city	0.052632
china	0.007937
adult	0.007092
homo sapiens	0.004274
feces	0.003663

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
feces	1.000000
adult	1.000000
china	1.000000
small village	0.500000
rural community	0.500000
city	0.500000
LOWER IN city	0.166667
LOWER IN rural community	0.166667
LOWER IN small village	0.166667

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
290	amnon	high in city compared to rural community small village in homo sapiens feces adult china	2018-02-01	v4	No	1 / 6
290	amnon	dominant homo sapiens, feces, adult, small village, rural community, china	2018-02-01	v4	No	1 / 9
290	amnon	high in rural community small village compared to city in homo sapiens feces adult china	2018-02-01	v4	No	1 / 13
290	amnon	dominant homo sapiens, feces, adult, city, china	2018-02-01	v4	No	1 / 17
290	amnon	common homo sapiens, feces, adult, city, china	2018-02-01	v4	No	1 / 154
290	amnon	common homo sapiens, feces, adult, small village, rural community, china	2018-02-01	v4	No	1 / 210

Problems / suggestions? Please email info AT dbbact DOT org