dbBact

×

Experiment ID: 290

Field	Description
name	recent urbanization in china is correlated with a westernized microbiome encoding increased virulence and antibiotic resistance genes
sra	prjna349463
datamd5	2fcbe2fe3e5b9c35d226f5bc5b378a95
mapmd5	acc40cf0540c0bed2dda190a835c3686

Annotations for experiment:

term enrichment score

Term	Score
small village	0.333333
LOWER IN small village	0.200000
rural community	0.181818
LOWER IN rural community	0.166667
LOWER IN city	0.153846
city	0.100000
adult	0.020202
china	0.018692
homo sapiens	0.010989
feces	0.008734

Fraction of dbbact annotations with this term covered by the query

Term	Score
small village	0.250000
LOWER IN small village	0.250000
LOWER IN rural community	0.166667
LOWER IN city	0.142857
rural community	0.111111
city	0.055556
adult	0.010204
china	0.009434
homo sapiens	0.005525
feces	0.004386

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
feces	1.000000
adult	1.000000
china	1.000000
small village	0.500000
rural community	0.500000
city	0.500000
LOWER IN city	0.166667
LOWER IN rural community	0.166667
LOWER IN small village	0.166667

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
290	amnon	high in city compared to rural community small village in homo sapiens feces adult china	2018-02-01	v4	No	1 / 14
290	amnon	dominant homo sapiens, feces, adult, small village, rural community, china	2018-02-01	v4	No	1 / 17
290	amnon	high in rural community small village compared to city in homo sapiens feces adult china	2018-02-01	v4	No	1 / 21
290	amnon	dominant homo sapiens, feces, adult, city, china	2018-02-01	v4	No	1 / 25
290	amnon	common homo sapiens, feces, adult, city, china	2018-02-01	v4	No	1 / 162
290	amnon	common homo sapiens, feces, adult, small village, rural community, china	2018-02-01	v4	No	1 / 218

Problems / suggestions? Please email info AT dbbact DOT org