Experiment ID: 311

Field Description
namethe impact of vegan production on the kimchi microbiome
sraprjna418790
datamd5069ad5dbf75cac139b09c6d0eac59605
mapmd58d49d8a4fa008cf4c6b0fce96677f172

Annotations for experiment:

term enrichment score
TermScore
state of rhode island0.635294
kimchi0.311111
foodon product type0.288288
food (fermented)0.174757
cabbage0.162162
red pepper0.162162
garlic0.162162
onion0.162162
allium cepa0.150000
food processing factory0.114286
ginger0.114286
scallion0.114286
fish sauce0.114286
radish0.114286
miso food product0.114286
floor0.108108
LOWER IN day 00.108108
chloroplast0.093023
mitochondrion0.078431
LOWER IN days 1-90.060606
days 1-90.060606
vegan kimchi0.060606
vegan0.060606
LOWER IN non vegan kimchi0.060606
LOWER IN non vegan0.060606
LOWER IN day 30.060606
non vegan0.060606
non vegan kimchi0.060606
LOWER IN vegan0.060606
LOWER IN vegan kimchi0.060606
day 00.058824
brassica0.058824
days 1-20.058824
late timepoints0.052632
LOWER IN early timepoints0.052632
early timepoints0.050000
united states of america0.010744
Fraction of dbbact annotations with this term covered by the query
TermScore
state of rhode island0.500000
food processing factory0.500000
ginger0.500000
scallion0.500000
cabbage0.500000
fish sauce0.500000
red pepper0.500000
kimchi0.500000
LOWER IN days 1-90.500000
radish0.500000
garlic0.500000
onion0.500000
miso food product0.500000
days 1-90.500000
vegan kimchi0.500000
vegan0.500000
LOWER IN non vegan kimchi0.500000
LOWER IN non vegan0.500000
LOWER IN day 30.500000
non vegan0.500000
non vegan kimchi0.500000
LOWER IN vegan0.500000
LOWER IN vegan kimchi0.500000
floor0.333333
day 00.333333
allium cepa0.333333
LOWER IN day 00.333333
brassica0.333333
days 1-20.333333
foodon product type0.200000
chloroplast0.166667
late timepoints0.142857
LOWER IN early timepoints0.142857
food (fermented)0.125000
early timepoints0.111111
mitochondrion0.100000
united states of america0.005405
Fraction of annotations for the query sequences containing the term
TermScore
united states of america0.870968
state of rhode island0.870968
foodon product type0.516129
food (fermented)0.290323
kimchi0.225806
cabbage0.096774
red pepper0.096774
garlic0.096774
allium cepa0.096774
onion0.096774
floor0.064516
food processing factory0.064516
ginger0.064516
scallion0.064516
fish sauce0.064516
radish0.064516
miso food product0.064516
LOWER IN day 00.064516
mitochondrion0.064516
chloroplast0.064516
day 00.032258
early timepoints0.032258
LOWER IN days 1-90.032258
late timepoints0.032258
days 1-90.032258
LOWER IN early timepoints0.032258
vegan kimchi0.032258
vegan0.032258
LOWER IN non vegan kimchi0.032258
LOWER IN non vegan0.032258
brassica0.032258
days 1-20.032258
LOWER IN day 30.032258
non vegan0.032258
non vegan kimchi0.032258
LOWER IN vegan0.032258
LOWER IN vegan kimchi0.032258
Exp. ID User ID Description Date Region Flag Sequences
311amnoncabbage mitochondrial dna (other mitochondrion, brassica, cabbage)2018-04-08v4No1 / 1
311amnonred pepper chloroplast (other red pepper, chloroplast)2018-04-09v4No1 / 1
311amnongarlic chloroplast (other chloroplast, garlic)2018-04-09v4No1 / 1
311amnonhighest in days 1-2 (middle) in kimchi fermentation ( high in days 1-2 compared to day 0 day 3 in united states of america state of rhode island kimchi food (fermented) )2018-04-09v4No1 / 1
311amnonlower in vegan compared to non-vegan kimchi ( high in non vegan non vegan kimchi compared to vegan vegan kimchi in united states of america state of rhode island kimchi food (fermented) )2018-04-09v4No1 / 1
311amnononion mitochondrial dna (other allium cepa, onion, mitochondrion)2018-04-08v4No1 / 2
311amnonhigher in vegan compared to non-vegan kimchi ( high in vegan kimchi vegan compared to non vegan kimchi non vegan in united states of america state of rhode island kimchi food (fermented) )2018-04-09v4No1 / 2
311amnonhighfreq united states of america, state of rhode island, miso food product, food (fermented)2018-04-09v4No1 / 3
311amnonhighfreq united states of america, state of rhode island, radish, foodon product type2018-04-09v4No1 / 3
311amnonhighfreq united states of america, state of rhode island, kimchi, food (fermented)2018-04-09v4No1 / 3
311amnonhighfreq ginger, united states of america, state of rhode island, foodon product type2018-04-09v4No1 / 4
311amnonhighfreq united states of america, state of rhode island, red pepper, foodon product type2018-04-09v4No1 / 4
311amnonhighfreq united states of america, state of rhode island, allium cepa, onion, foodon product type2018-04-09v4No1 / 4
311amnonhigh freq. in salted cabbage (highfreq cabbage, united states of america, state of rhode island, foodon product type)2018-04-09v4No1 / 6
311amnonhighfreq united states of america, state of rhode island, garlic, foodon product type2018-04-09v4No1 / 6
311amnonhigher in fermneted kimchi days>1 compared to day 0 ( high in late timepoints days 1-9 compared to day 0 early timepoints in united states of america state of rhode island kimchi food (fermented) )2018-04-09v4No1 / 6
311amnonhigh freq. in floor of kimchi production facility (highfreq united states of america, state of rhode island, floor, food processing factory)2018-04-09v4No1 / 10
311amnonhighfreq united states of america, state of rhode island, fish sauce, foodon product type2018-04-09v4No1 / 11
311amnonhighfreq united states of america, state of rhode island, scallion, foodon product type2018-04-09v4No1 / 14
311amnoncommon united states of america, state of rhode island, kimchi, food (fermented)2018-04-09v4No1 / 17
311amnoncommon united states of america, state of rhode island, miso food product, food (fermented)2018-04-09v4No1 / 22
311amnoncommon united states of america, state of rhode island, allium cepa, onion, foodon product type2018-04-09v4No1 / 26
311amnoncommon united states of america, state of rhode island, garlic, foodon product type2018-04-09v4No1 / 34
311amnoncommon united states of america, state of rhode island, radish, foodon product type2018-04-09v4No1 / 36
311amnonlower in fermneted kimchi days>1 compared to day 0 ( high in day 0 early timepoints compared to days 1-9 in united states of america state of rhode island kimchi food (fermented) )2018-04-09v4No1 / 62
311amnoncommon united states of america, state of rhode island, red pepper, foodon product type2018-04-09v4No1 / 63
311amnoncommon united states of america, state of rhode island, fish sauce, foodon product type2018-04-09v4No1 / 68
311amnoncommon in salted cabbage (common cabbage, united states of america, state of rhode island, foodon product type)2018-04-09v4No1 / 85
311amnoncommon united states of america, state of rhode island, scallion, foodon product type2018-04-09v4No1 / 121
311amnoncommon ginger, united states of america, state of rhode island, foodon product type2018-04-09v4No1 / 180
311amnoncommon in floor of kimchi production facility (common united states of america, state of rhode island, floor, food processing factory)2018-04-09v4No1 / 324

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