Experiment ID: 311

Field Description
namethe impact of vegan production on the kimchi microbiome
sraprjna418790
datamd5069ad5dbf75cac139b09c6d0eac59605
mapmd58d49d8a4fa008cf4c6b0fce96677f172

Annotations for experiment:

term enrichment score
TermScore
state of rhode island0.635294
food product0.336842
kimchi0.311111
fermented food product0.211765
cabbage0.162162
red pepper0.162162
garlic0.162162
onion0.162162
allium cepa0.150000
food processing factory0.114286
ginger0.114286
scallion0.114286
fish sauce0.114286
radish0.114286
miso0.114286
floor0.108108
LOWER IN day 00.108108
chloroplast0.093023
mitochondrion0.088889
LOWER IN days 1-90.060606
days 1-90.060606
vegan kimchi0.060606
vegan0.060606
LOWER IN non vegan kimchi0.060606
LOWER IN non vegan0.060606
non vegan0.060606
non vegan kimchi0.060606
LOWER IN vegan0.060606
LOWER IN vegan kimchi0.060606
LOWER IN day 30.060606
day 00.058824
days 1-20.058824
brassica0.058824
late timepoints0.052632
LOWER IN early timepoints0.052632
early timepoints0.050000
united states of america0.011354
Fraction of dbbact annotations with this term covered by the query
TermScore
state of rhode island0.500000
food processing factory0.500000
ginger0.500000
scallion0.500000
cabbage0.500000
fish sauce0.500000
red pepper0.500000
kimchi0.500000
LOWER IN days 1-90.500000
radish0.500000
garlic0.500000
onion0.500000
miso0.500000
days 1-90.500000
vegan kimchi0.500000
vegan0.500000
LOWER IN non vegan kimchi0.500000
LOWER IN non vegan0.500000
non vegan0.500000
non vegan kimchi0.500000
LOWER IN vegan0.500000
LOWER IN vegan kimchi0.500000
LOWER IN day 30.500000
floor0.333333
day 00.333333
allium cepa0.333333
LOWER IN day 00.333333
days 1-20.333333
brassica0.333333
food product0.250000
fermented food product0.166667
chloroplast0.166667
late timepoints0.142857
LOWER IN early timepoints0.142857
mitochondrion0.142857
early timepoints0.111111
united states of america0.005714
Fraction of annotations for the query sequences containing the term
TermScore
united states of america0.870968
state of rhode island0.870968
food product0.516129
fermented food product0.290323
kimchi0.225806
cabbage0.096774
red pepper0.096774
garlic0.096774
allium cepa0.096774
onion0.096774
floor0.064516
food processing factory0.064516
ginger0.064516
scallion0.064516
fish sauce0.064516
radish0.064516
miso0.064516
LOWER IN day 00.064516
mitochondrion0.064516
chloroplast0.064516
day 00.032258
early timepoints0.032258
LOWER IN days 1-90.032258
late timepoints0.032258
days 1-90.032258
LOWER IN early timepoints0.032258
vegan kimchi0.032258
vegan0.032258
LOWER IN non vegan kimchi0.032258
LOWER IN non vegan0.032258
non vegan0.032258
non vegan kimchi0.032258
LOWER IN vegan0.032258
LOWER IN vegan kimchi0.032258
days 1-20.032258
LOWER IN day 30.032258
brassica0.032258
Exp. ID User ID Description Date Sequences
311amnonlower in vegan compared to non-vegan kimchi ( high in non vegan non vegan kimchi compared to vegan vegan kimchi in united states of america state of rhode island fermented food product kimchi )2018-04-091 / 1
311amnonhighest in days 1-2 (middle) in kimchi fermentation ( high in days 1-2 compared to day 0 day 3 in united states of america state of rhode island fermented food product kimchi )2018-04-091 / 1
311amnongarlic chloroplast (other chloroplast, garlic)2018-04-091 / 1
311amnonred pepper chloroplast (other red pepper, chloroplast)2018-04-091 / 1
311amnoncabbage mitochondrial dna (other mitochondrion, brassica, cabbage)2018-04-081 / 1
311amnonhigher in vegan compared to non-vegan kimchi ( high in vegan kimchi vegan compared to non vegan kimchi non vegan in united states of america state of rhode island fermented food product kimchi )2018-04-091 / 2
311amnononion mitochondrial dna (other allium cepa, onion, mitochondrion)2018-04-081 / 2
311amnonhighfreq united states of america, state of rhode island, fermented food product, kimchi2018-04-091 / 3
311amnonhighfreq united states of america, state of rhode island, food product, radish2018-04-091 / 3
311amnonhighfreq united states of america, state of rhode island, miso, fermented food product2018-04-091 / 3
311amnonhighfreq united states of america, state of rhode island, allium cepa, onion, food product2018-04-091 / 4
311amnonhighfreq food product, united states of america, state of rhode island, red pepper2018-04-091 / 4
311amnonhighfreq ginger, food product, united states of america, state of rhode island2018-04-091 / 4
311amnonhigher in fermneted kimchi days>1 compared to day 0 ( high in late timepoints days 1-9 compared to day 0 early timepoints in united states of america state of rhode island fermented food product kimchi )2018-04-091 / 6
311amnonhighfreq united states of america, state of rhode island, garlic, food product2018-04-091 / 6
311amnonhigh freq. in salted cabbage (highfreq cabbage, food product, united states of america, state of rhode island)2018-04-091 / 6
311amnonhigh freq. in floor of kimchi production facility (highfreq united states of america, state of rhode island, floor, food processing factory)2018-04-091 / 10
311amnonhighfreq food product, united states of america, state of rhode island, fish sauce2018-04-091 / 11
311amnonhighfreq united states of america, state of rhode island, food product, scallion2018-04-091 / 14
311amnoncommon united states of america, state of rhode island, fermented food product, kimchi2018-04-091 / 17
311amnoncommon united states of america, state of rhode island, miso, fermented food product2018-04-091 / 22
311amnoncommon united states of america, state of rhode island, allium cepa, onion, food product2018-04-091 / 26
311amnoncommon united states of america, state of rhode island, garlic, food product2018-04-091 / 34
311amnoncommon united states of america, state of rhode island, food product, radish2018-04-091 / 36
311amnonlower in fermneted kimchi days>1 compared to day 0 ( high in day 0 early timepoints compared to days 1-9 in united states of america state of rhode island fermented food product kimchi )2018-04-091 / 62
311amnoncommon food product, united states of america, state of rhode island, red pepper2018-04-091 / 63
311amnoncommon food product, united states of america, state of rhode island, fish sauce2018-04-091 / 68
311amnoncommon in salted cabbage (common cabbage, food product, united states of america, state of rhode island)2018-04-091 / 85
311amnoncommon united states of america, state of rhode island, food product, scallion2018-04-091 / 121
311amnoncommon ginger, food product, united states of america, state of rhode island2018-04-091 / 180
311amnoncommon in floor of kimchi production facility (common united states of america, state of rhode island, floor, food processing factory)2018-04-091 / 324

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