dbBact

Experiment ID: 314

Field	Description
name	the significance of the diversity and composition of the cecal microbiota of the tibetan swine
sra	srp058661
datamd5	467deaf6be4738d87bbf875d683d6db8
mapmd5	d7fe91815bdc69f5ecb43538638df5b6

Annotations for experiment:

term enrichment score

Term	Score
tibetan pig	0.500000
tibetan swine	0.500000
tibet autonomous region	0.333333
cecal content	0.250000
LOWER IN sus scrofa	0.250000
LOWER IN tibetan pig	0.250000
LOWER IN tibetan swine	0.250000
LOWER IN pig	0.222222
sus scrofa	0.105263
pig	0.105263
farm	0.045455
caecum	0.040000
china	0.009615

Fraction of dbbact annotations with this term covered by the query

Term	Score
tibetan pig	0.500000
tibetan swine	0.500000
LOWER IN sus scrofa	0.500000
LOWER IN tibetan pig	0.500000
LOWER IN tibetan swine	0.500000
LOWER IN pig	0.333333
tibet autonomous region	0.200000
cecal content	0.142857
sus scrofa	0.058824
pig	0.058824
farm	0.023256
caecum	0.020408
china	0.004831

Fraction of annotations for the query sequences containing the term

Term	Score
farm	1.000000
caecum	1.000000
tibet autonomous region	1.000000
cecal content	1.000000
china	1.000000
tibetan pig	0.500000
tibetan swine	0.500000
sus scrofa	0.500000
pig	0.500000
LOWER IN sus scrofa	0.166667
LOWER IN pig	0.166667
LOWER IN tibetan pig	0.166667
LOWER IN tibetan swine	0.166667

Number of experiments associating the term to the sequence

Term	Score
farm	1.000000
caecum	1.000000
tibet autonomous region	1.000000
cecal content	1.000000
tibetan pig	1.000000
tibetan swine	1.000000
china	1.000000
sus scrofa	1.000000
pig	1.000000
LOWER IN sus scrofa	1.000000
LOWER IN pig	1.000000
LOWER IN tibetan pig	1.000000
LOWER IN tibetan swine	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
314	amnon	dominant farm, caecum, tibet autonomous region, cecal content, tibetan pig, tibetan swine, china	2018-04-10	v4	1 / 16	approved	No
314	amnon	dominant farm, caecum, sus scrofa, tibet autonomous region, pig, cecal content, china	2018-04-10	v4	1 / 23	approved	No
314	amnon	high in sus scrofa pig compared to tibetan pig tibetan swine in farm caecum tibet autonomous region cecal content china	2018-04-10	v4	1 / 136	approved	No
314	amnon	high in tibetan pig tibetan swine compared to sus scrofa pig in farm caecum tibet autonomous region cecal content china	2018-04-10	v4	1 / 157	approved	No
314	amnon	common farm, caecum, sus scrofa, tibet autonomous region, pig, cecal content, china	2018-04-10	v4	1 / 402	approved	No
314	amnon	common farm, caecum, tibet autonomous region, cecal content, tibetan pig, tibetan swine, china	2018-04-10	v4	1 / 467	approved	No

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