dbBact

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Experiment ID: 352

Field	Description
name	comparison of small gut and whole gut microbiota of first-degree relatives with adult patients with celiac disease and controls
sra	prjna385740
datamd5	deae44d94cee3d6ce6abd4e17c56a703
mapmd5	d2c66e37efd152997a161301facb07b5

Annotations for experiment:

term enrichment score

Term	Score
new delhi	0.666667
small intestine	0.250000
india	0.222222
LOWER IN small intestine	0.166667
duodenum	0.153846
LOWER IN duodenum	0.125000
LOWER IN feces	0.074074
homo sapiens	0.007634
feces	0.006557

Fraction of dbbact annotations with this term covered by the query

Term	Score
new delhi	0.500000
small intestine	0.166667
LOWER IN small intestine	0.166667
india	0.125000
LOWER IN duodenum	0.100000
duodenum	0.090909
LOWER IN feces	0.047619
homo sapiens	0.003831
feces	0.003300

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
new delhi	1.000000
india	1.000000
small intestine	0.500000
duodenum	0.500000
feces	0.500000
LOWER IN feces	0.166667
LOWER IN small intestine	0.166667
LOWER IN duodenum	0.166667

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
352	amnon	dominant homo sapiens, feces, new delhi, india	2018-07-30	v4	No	1 / 16
352	amnon	high freq. in duodenal biopsies (dominant homo sapiens, new delhi, duodenum, small intestine, india)	2018-07-30	v4	No	1 / 17
352	amnon	common homo sapiens, feces, new delhi, india	2018-07-30	v4	No	1 / 41
352	amnon	common in duodenal biopsies (common homo sapiens, new delhi, duodenum, small intestine, india)	2018-07-30	v4	No	1 / 121
352	amnon	high in feces compared to small intestine duodenum in homo sapiens new delhi india	2018-07-30	v4	No	1 / 190
352	amnon	high in small intestine duodenum compared to feces in homo sapiens new delhi india	2018-07-30	v4	No	1 / 545

Problems / suggestions? Please email info AT dbbact DOT org