dbBact

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Experiment ID: 352

Field	Description
name	comparison of small gut and whole gut microbiota of first-degree relatives with adult patients with celiac disease and controls
sra	prjna385740
datamd5	deae44d94cee3d6ce6abd4e17c56a703
mapmd5	d2c66e37efd152997a161301facb07b5

Annotations for experiment:

term enrichment score

Term	Score
new delhi	0.666667
small intestine	0.333333
india	0.250000
LOWER IN small intestine	0.200000
duodenum	0.181818
LOWER IN duodenum	0.142857
LOWER IN feces	0.095238
homo sapiens	0.011173
feces	0.008850

Fraction of dbbact annotations with this term covered by the query

Term	Score
new delhi	0.500000
small intestine	0.250000
LOWER IN small intestine	0.250000
india	0.142857
LOWER IN duodenum	0.125000
duodenum	0.111111
LOWER IN feces	0.066667
homo sapiens	0.005618
feces	0.004464

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
new delhi	1.000000
india	1.000000
small intestine	0.500000
duodenum	0.500000
feces	0.500000
LOWER IN feces	0.166667
LOWER IN small intestine	0.166667
LOWER IN duodenum	0.166667

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
352	amnon	dominant homo sapiens, feces, new delhi, india	2018-07-30	v4	No	1 / 16
352	amnon	high freq. in duodenal biopsies (dominant homo sapiens, new delhi, duodenum, small intestine, india)	2018-07-30	v4	No	1 / 17
352	amnon	common homo sapiens, feces, new delhi, india	2018-07-30	v4	No	1 / 41
352	amnon	common in duodenal biopsies (common homo sapiens, new delhi, duodenum, small intestine, india)	2018-07-30	v4	No	1 / 121
352	amnon	high in feces compared to small intestine duodenum in homo sapiens new delhi india	2018-07-30	v4	No	1 / 190
352	amnon	high in small intestine duodenum compared to feces in homo sapiens new delhi india	2018-07-30	v4	No	1 / 545

Problems / suggestions? Please email info AT dbbact DOT org