Experiment ID: 371

Field Description
namechanges in the gut microbiota of urban subjects during an immersion in the traditional diet and lifestyle of a rainforest village
sraerp110254
qiita11874
datamd579fa547ca866379fdb8575136fe033cc
mapmd5b9a4450f43e7e96edcb537032ebe3032

Annotations for experiment:

term enrichment score
TermScore
venezuela0.472727
amerindian0.472727
hunter gatherer0.382353
LOWER IN amerindian0.272727
LOWER IN hunter gatherer0.272727
LOWER IN venezuela0.272727
LOWER IN obsolete_juvenile stage0.181818
LOWER IN city0.176471
LOWER IN infant0.153846
LOWER IN united states of america0.150000
obsolete_juvenile stage0.111111
city0.093750
LOWER IN adult0.083333
saliva0.081081
infant0.080000
skin0.074074
adult0.026667
homo sapiens0.013986
united states of america0.011091
feces0.010490
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN amerindian0.500000
LOWER IN hunter gatherer0.500000
LOWER IN venezuela0.500000
venezuela0.333333
amerindian0.333333
LOWER IN obsolete_juvenile stage0.333333
hunter gatherer0.250000
LOWER IN infant0.200000
LOWER IN city0.166667
LOWER IN united states of america0.125000
obsolete_juvenile stage0.100000
city0.062500
LOWER IN adult0.062500
infant0.058824
saliva0.045455
skin0.043478
adult0.014925
homo sapiens0.007042
united states of america0.005714
feces0.005319
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
venezuela0.812500
hunter gatherer0.812500
amerindian0.812500
feces0.375000
saliva0.375000
skin0.250000
LOWER IN city0.187500
LOWER IN united states of america0.187500
united states of america0.187500
city0.187500
LOWER IN amerindian0.187500
LOWER IN hunter gatherer0.187500
LOWER IN venezuela0.187500
adult0.125000
LOWER IN infant0.125000
LOWER IN obsolete_juvenile stage0.125000
obsolete_juvenile stage0.125000
infant0.125000
LOWER IN adult0.125000
Exp. ID User ID Description Date Sequences
371amnonhighfreq feces, homo sapiens, hunter gatherer, amerindian, venezuela2018-09-061 / 11
371amnonhighfreq homo sapiens, skin, amerindian, hunter gatherer, venezuela2018-09-061 / 14
371amnonhighfreq homo sapiens, venezuela, hunter gatherer, amerindian, saliva2018-09-061 / 15
371amnonNEGATIVELY correlated with age in amerindians ( high in infant obsolete_juvenile stage compared to adult in feces homo sapiens venezuela hunter gatherer amerindian )2018-09-061 / 15
371amnonnegatively correlated with age in amerindian saliva ( high in obsolete_juvenile stage infant compared to adult in homo sapiens venezuela hunter gatherer amerindian saliva )2018-09-061 / 16
371amnonpositively correlated with age in amerindian saliva ( high in adult compared to obsolete_juvenile stage infant in homo sapiens venezuela hunter gatherer amerindian saliva )2018-09-061 / 17
371amnonhigher in saliva of amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in homo sapiens saliva )2018-09-061 / 24
371amnonpositively correlated with age in amerindians ( high in adult compared to infant obsolete_juvenile stage in feces homo sapiens venezuela hunter gatherer amerindian )2018-09-061 / 27
371amnoncommon homo sapiens, venezuela, hunter gatherer, amerindian, saliva2018-09-061 / 43
371amnonlower in saliva of amerindians compared to western visitors ( high in united states of america city compared to venezuela amerindian hunter gatherer in homo sapiens saliva )2018-09-061 / 60
371amnoncommon feces, homo sapiens, hunter gatherer, amerindian, venezuela2018-09-061 / 121
371amnonlower in skin of amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in homo sapiens skin )2018-09-061 / 195
371amnoncommon homo sapiens, skin, amerindian, hunter gatherer, venezuela2018-09-061 / 195
371amnonlower in amerindians compared to western visitors ( high in united states of america city compared to amerindian hunter gatherer venezuela in feces homo sapiens )2018-09-061 / 417
371amnonhigher in amerindians compared to western visitors ( high in hunter gatherer amerindian venezuela compared to city united states of america in feces homo sapiens )2018-09-061 / 443
371amnonhigher in skin of amerindians compared to western visitors ( high in venezuela hunter gatherer amerindian compared to city united states of america in homo sapiens skin )2018-09-061 / 854

Problems / suggestions? Please email info AT dbbact DOT org