Experiment ID: 389

Field Description
namedevelopment of the tonsillar microbiome in pigs from newborn through weaning
srasrp110992
datamd53b7dee360ed4a1833989fa8a3c74225d
mapmd5153ba489dc300bd25f3ed84a99085750

Annotations for experiment:

term enrichment score
TermScore
tonsil0.454545
age 1-3 weeks0.300000
state of michigan0.250000
age 8 hours0.222222
age 4 weeks0.206897
nipple0.200000
pig0.200000
sus scrofa0.200000
vagina0.181818
LOWER IN age 1-3 weeks0.125000
LOWER IN age 4 weeks0.117647
farm0.095238
skin0.066667
adult0.028369
united states of america0.011364
Fraction of dbbact annotations with this term covered by the query
TermScore
age 1-3 weeks0.500000
LOWER IN age 1-3 weeks0.500000
age 8 hours0.500000
tonsil0.333333
LOWER IN age 4 weeks0.333333
nipple0.333333
vagina0.250000
age 4 weeks0.200000
state of michigan0.142857
pig0.111111
sus scrofa0.111111
farm0.050000
skin0.043478
adult0.014925
united states of america0.005714
Fraction of annotations for the query sequences containing the term
TermScore
pig1.000000
sus scrofa1.000000
united states of america1.000000
state of michigan1.000000
farm1.000000
tonsil0.714286
adult0.285714
age 1-3 weeks0.214286
age 4 weeks0.214286
skin0.142857
nipple0.142857
vagina0.142857
age 8 hours0.142857
LOWER IN age 4 weeks0.071429
LOWER IN age 1-3 weeks0.071429
Exp. ID User ID Description Date Sequences
389amnonhighfreq pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-041 / 11
389amnonhighfreq pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-041 / 13
389amnonhighfreq pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-041 / 14
389amnonhighfreq pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-041 / 17
389amnonhighfreq pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-041 / 17
389amnonhighfreq pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-041 / 17
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-041 / 22
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-041 / 41
389amnoncommon pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-041 / 43
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-041 / 71
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-041 / 72
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-041 / 80
389amnon high in age 4 weeks compared to age 1-3 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-041 / 168
389amnon high in age 1-3 weeks compared to age 4 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-041 / 189

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