Experiment ID: 389

Field Description
namedevelopment of the tonsillar microbiome in pigs from newborn through weaning
srasrp110992
datamd53b7dee360ed4a1833989fa8a3c74225d
mapmd5153ba489dc300bd25f3ed84a99085750

Annotations for experiment:

term enrichment score
TermScore
tonsil0.312500
age 1-3 weeks0.300000
age 8 hours0.222222
state of michigan0.222222
age 4 weeks0.206897
nipple0.200000
pig0.142857
sus scrofa0.142857
vagina0.133333
LOWER IN age 1-3 weeks0.125000
LOWER IN age 4 weeks0.117647
farm0.064516
skin0.054054
adult0.013746
united states of america0.008811
Fraction of dbbact annotations with this term covered by the query
TermScore
age 1-3 weeks0.500000
LOWER IN age 1-3 weeks0.500000
age 8 hours0.500000
LOWER IN age 4 weeks0.333333
nipple0.333333
tonsil0.200000
age 4 weeks0.200000
state of michigan0.125000
vagina0.125000
pig0.076923
sus scrofa0.076923
farm0.033333
skin0.033333
adult0.007042
united states of america0.004425
Fraction of annotations for the query sequences containing the term
TermScore
pig1.000000
sus scrofa1.000000
united states of america1.000000
state of michigan1.000000
farm1.000000
tonsil0.714286
adult0.285714
age 1-3 weeks0.214286
age 4 weeks0.214286
skin0.142857
nipple0.142857
vagina0.142857
age 8 hours0.142857
LOWER IN age 4 weeks0.071429
LOWER IN age 1-3 weeks0.071429
Exp. ID User ID Description Date Region Flag Sequences
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 3
389amnondominant pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 5
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 6
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 9
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 9
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 9
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 14
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 33
389amnoncommon pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 35
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 63
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 64
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 72
389amnon high in age 4 weeks compared to age 1-3 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 160
389amnon high in age 1-3 weeks compared to age 4 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 181

Problems / suggestions? Please email info AT dbbact DOT org