Experiment ID: 389

Field Description
namedevelopment of the tonsillar microbiome in pigs from newborn through weaning
srasrp110992
datamd53b7dee360ed4a1833989fa8a3c74225d
mapmd5153ba489dc300bd25f3ed84a99085750

Annotations for experiment:

term enrichment score
TermScore
age 1-3 weeks0.300000
tonsil0.238095
age 8 hours0.222222
nipple0.200000
state of michigan0.200000
age 4 weeks0.187500
LOWER IN age 1-3 weeks0.125000
LOWER IN age 4 weeks0.117647
sus scrofa0.111111
pig0.111111
vagina0.090909
farm0.045455
skin0.041667
adult0.008457
united states of america0.006757
Fraction of dbbact annotations with this term covered by the query
TermScore
age 1-3 weeks0.500000
LOWER IN age 1-3 weeks0.500000
age 8 hours0.500000
LOWER IN age 4 weeks0.333333
nipple0.333333
age 4 weeks0.166667
tonsil0.142857
state of michigan0.111111
vagina0.066667
sus scrofa0.058824
pig0.058824
skin0.024390
farm0.023256
adult0.004292
united states of america0.003390
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
farm1.000000
sus scrofa1.000000
state of michigan1.000000
pig1.000000
tonsil0.714286
adult0.285714
age 1-3 weeks0.214286
age 4 weeks0.214286
nipple0.142857
skin0.142857
vagina0.142857
age 8 hours0.142857
LOWER IN age 4 weeks0.071429
LOWER IN age 1-3 weeks0.071429
Number of experiments associating the term to the sequence
TermScore
age 1-3 weeks1.000000
LOWER IN age 4 weeks1.000000
united states of america1.000000
farm1.000000
tonsil1.000000
sus scrofa1.000000
state of michigan1.000000
pig1.000000
age 4 weeks1.000000
LOWER IN age 1-3 weeks1.000000
nipple1.000000
skin1.000000
adult1.000000
vagina1.000000
age 8 hours1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
389amnondominant united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 4 weeks2018-11-04v41 / 11approvedNo
389amnondominant united states of america, farm, vagina, sus scrofa, state of michigan, pig2018-11-04v41 / 13approvedNo
389amnondominant united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 8 hours2018-11-04v41 / 14approvedNo
389amnondominant united states of america, farm, nipple, skin, adult, sus scrofa, state of michigan, pig2018-11-04v41 / 17approvedNo
389amnondominant united states of america, farm, tonsil, adult, sus scrofa, state of michigan, pig2018-11-04v41 / 17approvedNo
389amnondominant united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 1-3 weeks2018-11-04v41 / 17approvedNo
389amnoncommon united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 8 hours2018-11-04v41 / 22approvedNo
389amnoncommon united states of america, farm, tonsil, adult, sus scrofa, state of michigan, pig2018-11-04v41 / 41approvedNo
389amnoncommon united states of america, farm, vagina, sus scrofa, state of michigan, pig2018-11-04v41 / 43approvedNo
389amnoncommon united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 4 weeks2018-11-04v41 / 71approvedNo
389amnoncommon united states of america, farm, nipple, skin, adult, sus scrofa, state of michigan, pig2018-11-04v41 / 72approvedNo
389amnoncommon united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 1-3 weeks2018-11-04v41 / 80approvedNo
389amnon high in age 4 weeks compared to age 1-3 weeks in united states of america farm tonsil sus scrofa state of michigan pig 2018-11-04v41 / 168approvedNo
389amnon high in age 1-3 weeks compared to age 4 weeks in united states of america farm tonsil sus scrofa state of michigan pig 2018-11-04v41 / 189approvedNo

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