Experiment ID: 389

Field Description
namedevelopment of the tonsillar microbiome in pigs from newborn through weaning
srasrp110992
datamd53b7dee360ed4a1833989fa8a3c74225d
mapmd5153ba489dc300bd25f3ed84a99085750

Annotations for experiment:

term enrichment score
TermScore
tonsil0.312500
age 1-3 weeks0.300000
age 8 hours0.222222
age 4 weeks0.206897
nipple0.200000
state of michigan0.200000
LOWER IN age 1-3 weeks0.125000
pig0.117647
sus scrofa0.117647
LOWER IN age 4 weeks0.117647
vagina0.117647
farm0.055556
skin0.050000
adult0.011940
united states of america0.008264
Fraction of dbbact annotations with this term covered by the query
TermScore
age 1-3 weeks0.500000
LOWER IN age 1-3 weeks0.500000
age 8 hours0.500000
LOWER IN age 4 weeks0.333333
nipple0.333333
tonsil0.200000
age 4 weeks0.200000
state of michigan0.111111
vagina0.100000
pig0.062500
sus scrofa0.062500
skin0.030303
farm0.028571
adult0.006098
united states of america0.004149
Fraction of annotations for the query sequences containing the term
TermScore
pig1.000000
sus scrofa1.000000
united states of america1.000000
state of michigan1.000000
farm1.000000
tonsil0.714286
adult0.285714
age 1-3 weeks0.214286
age 4 weeks0.214286
skin0.142857
nipple0.142857
vagina0.142857
age 8 hours0.142857
LOWER IN age 4 weeks0.071429
LOWER IN age 1-3 weeks0.071429
Exp. ID User ID Description Date Region Flag Sequences
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 11
389amnondominant pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 13
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 14
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 17
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 17
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 17
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v4No1 / 22
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v4No1 / 41
389amnoncommon pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v4No1 / 43
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v4No1 / 71
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v4No1 / 72
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v4No1 / 80
389amnon high in age 4 weeks compared to age 1-3 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 168
389amnon high in age 1-3 weeks compared to age 4 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v4No1 / 189

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