Experiment ID: 389

Field Description
namedevelopment of the tonsillar microbiome in pigs from newborn through weaning
srasrp110992
datamd53b7dee360ed4a1833989fa8a3c74225d
mapmd5153ba489dc300bd25f3ed84a99085750

Annotations for experiment:

term enrichment score
TermScore
age 1-3 weeks0.300000
tonsil0.238095
age 8 hours0.222222
age 4 weeks0.206897
nipple0.200000
state of michigan0.200000
LOWER IN age 1-3 weeks0.125000
sus scrofa0.117647
pig0.117647
vagina0.111111
LOWER IN age 4 weeks0.105263
farm0.054054
skin0.050000
adult0.011331
united states of america0.008065
Fraction of dbbact annotations with this term covered by the query
TermScore
age 1-3 weeks0.500000
LOWER IN age 1-3 weeks0.500000
age 8 hours0.500000
nipple0.333333
LOWER IN age 4 weeks0.200000
age 4 weeks0.200000
tonsil0.142857
state of michigan0.111111
vagina0.090909
sus scrofa0.062500
pig0.062500
skin0.030303
farm0.027778
adult0.005780
united states of america0.004049
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
farm1.000000
sus scrofa1.000000
state of michigan1.000000
pig1.000000
tonsil0.714286
adult0.285714
age 1-3 weeks0.214286
age 4 weeks0.214286
nipple0.142857
skin0.142857
vagina0.142857
age 8 hours0.142857
LOWER IN age 4 weeks0.071429
LOWER IN age 1-3 weeks0.071429
Exp. ID User ID Description Date Region Flag Sequences
389amnondominant united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 4 weeks2018-11-04v4No1 / 11
389amnondominant united states of america, farm, vagina, sus scrofa, state of michigan, pig2018-11-04v4No1 / 13
389amnondominant united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 8 hours2018-11-04v4No1 / 14
389amnondominant united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 1-3 weeks2018-11-04v4No1 / 17
389amnondominant united states of america, farm, tonsil, adult, sus scrofa, state of michigan, pig2018-11-04v4No1 / 17
389amnondominant united states of america, farm, nipple, skin, adult, sus scrofa, state of michigan, pig2018-11-04v4No1 / 17
389amnoncommon united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 8 hours2018-11-04v4No1 / 22
389amnoncommon united states of america, farm, tonsil, adult, sus scrofa, state of michigan, pig2018-11-04v4No1 / 41
389amnoncommon united states of america, farm, vagina, sus scrofa, state of michigan, pig2018-11-04v4No1 / 43
389amnoncommon united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 4 weeks2018-11-04v4No1 / 71
389amnoncommon united states of america, farm, nipple, skin, adult, sus scrofa, state of michigan, pig2018-11-04v4No1 / 72
389amnoncommon united states of america, farm, tonsil, sus scrofa, state of michigan, pig, age 1-3 weeks2018-11-04v4No1 / 80
389amnon high in age 4 weeks compared to age 1-3 weeks in united states of america farm tonsil sus scrofa state of michigan pig 2018-11-04v4No1 / 168
389amnon high in age 1-3 weeks compared to age 4 weeks in united states of america farm tonsil sus scrofa state of michigan pig 2018-11-04v4No1 / 189

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