dbBact

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Experiment ID: 39

Field	Description
name	influence of whole-wheat consumption on fecal microbial ecology of obese diabetic mice
sra	srp058568
sra	prjna281761
datamd5	f09d32302e618f56bebf75534cdd4849
mapmd5	c0dd6f790db1854741630de8fb7a3218

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN whole wheat diet	0.333333
whole grain diet	0.333333
LOWER IN diet	0.285714
normal diet	0.200000
LOWER IN normal diet	0.200000
obesity	0.125000
diet	0.071429
mus musculus	0.027778
research facility	0.011111
control	0.009756
feces	0.005208

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN whole wheat diet	0.500000
whole grain diet	0.500000
LOWER IN diet	0.333333
normal diet	0.166667
LOWER IN normal diet	0.166667
obesity	0.066667
diet	0.041667
mus musculus	0.014085
research facility	0.005587
control	0.004975
feces	0.002611

Fraction of annotations for the query sequences containing the term

Term	Score
mus musculus	1.000000
research facility	1.000000
feces	1.000000
obesity	1.000000
normal diet	0.250000
control	0.250000
LOWER IN diet	0.250000
LOWER IN whole wheat diet	0.250000
whole grain diet	0.250000
diet	0.250000
LOWER IN normal diet	0.250000

Number of experiments associating the term to the sequence

Term	Score
mus musculus	1.000000
research facility	1.000000
feces	1.000000
obesity	1.000000
normal diet	1.000000
control	1.000000
LOWER IN diet	1.000000
LOWER IN whole wheat diet	1.000000
whole grain diet	1.000000
diet	1.000000
LOWER IN normal diet	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
39	amnon	high freq. in obsese lepr-db mice (dominant mus musculus, research facility, feces, obesity)	2016-12-09	v4	1 / 18	approved	No
39	amnon	higer in obese mice eating whole grain diet compared to normal chow ( high in whole grain diet diet compared to normal diet in mus musculus research facility feces obesity )	2016-12-09	v4	1 / 71	approved	No
39	amnon	lower in whole wheat diet compared to normal chow ( high in normal diet control compared to diet whole wheat diet in mus musculus research facility feces obesity )	2016-12-09	v4	1 / 83	approved	No
39	amnon	common in obese lepr-db mice (common mus musculus, research facility, feces, obesity)	2016-12-09	v4	1 / 132	approved	No

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