Experiment ID: 399

Field Description
namegut microbiota density influences host physiology and is shaped by host and microbial factors
sraprjna413199
datamd58bcd1d2307f9b6cc59dbbf639199e251
mapmd5459447b47c990bc5f91d513e3c1bfab2

Annotations for experiment:

term enrichment score
TermScore
state of tennessee0.262295
zoological garden0.113475
LOWER IN crohn's disease0.090909
crohn's disease0.090909
african elephant0.086957
ailurus fulgens0.086957
red panda0.086957
mustela putorius furo0.086957
ferret0.086957
macaque0.083333
loxodonta africana0.083333
panthera leo0.083333
lion0.083333
LOWER IN antibiotic0.081967
antibiotic0.081967
rabbit0.080000
chimpanzee0.080000
pan troglodytes0.076923
macaca mulatta0.074074
gorilla gorilla0.074074
oryctolagus cuniculus0.068966
LOWER IN ulcerative colitis0.068966
ulcerative colitis0.068966
sheep0.064516
ovis aries0.060606
rattus norvegicus0.057143
sus scrofa0.054054
pig0.054054
rat0.051282
LOWER IN clindamycin0.045455
LOWER IN ciprofloxacin0.045455
dog0.045455
ciprofloxacin0.045455
clindamycin0.045455
LOWER IN vancomycin0.043478
vancomycin0.043478
LOWER IN ampicillin0.042553
canis lupus familiaris0.042553
ampicillin0.042553
LOWER IN metronidazole0.040816
metronidazole0.040816
mouse0.033058
mus musculus0.030075
research facility0.013367
control0.010471
LOWER IN control0.010471
united states of america0.008065
homo sapiens0.007194
feces0.006349
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN crohn's disease1.000000
crohn's disease1.000000
LOWER IN clindamycin0.500000
african elephant0.500000
LOWER IN ciprofloxacin0.500000
ciprofloxacin0.500000
ailurus fulgens0.500000
red panda0.500000
mustela putorius furo0.500000
ferret0.500000
clindamycin0.500000
macaque0.333333
loxodonta africana0.333333
panthera leo0.333333
lion0.333333
rabbit0.250000
chimpanzee0.250000
LOWER IN vancomycin0.250000
vancomycin0.250000
state of tennessee0.200000
pan troglodytes0.200000
LOWER IN ampicillin0.200000
ampicillin0.200000
macaca mulatta0.166667
gorilla gorilla0.166667
LOWER IN metronidazole0.142857
metronidazole0.142857
oryctolagus cuniculus0.125000
LOWER IN ulcerative colitis0.125000
ulcerative colitis0.125000
sheep0.100000
ovis aries0.083333
rattus norvegicus0.071429
zoological garden0.066667
LOWER IN antibiotic0.062500
sus scrofa0.062500
pig0.062500
antibiotic0.062500
rat0.055556
dog0.043478
canis lupus familiaris0.038462
mouse0.017544
mus musculus0.015873
research facility0.006803
control0.005405
LOWER IN control0.005405
united states of america0.004049
homo sapiens0.003690
feces0.003185
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
united states of america1.000000
research facility0.380952
state of tennessee0.380952
zoological garden0.380952
mus musculus0.285714
mouse0.285714
control0.166667
LOWER IN control0.166667
homo sapiens0.142857
LOWER IN antibiotic0.119048
antibiotic0.119048
oryctolagus cuniculus0.047619
rabbit0.047619
ovis aries0.047619
sheep0.047619
pan troglodytes0.047619
chimpanzee0.047619
macaca mulatta0.047619
macaque0.047619
gorilla gorilla0.047619
LOWER IN crohn's disease0.047619
sus scrofa0.047619
pig0.047619
loxodonta africana0.047619
african elephant0.047619
rattus norvegicus0.047619
rat0.047619
LOWER IN ulcerative colitis0.047619
canis lupus familiaris0.047619
dog0.047619
panthera leo0.047619
lion0.047619
ulcerative colitis0.047619
crohn's disease0.047619
ailurus fulgens0.047619
red panda0.047619
mustela putorius furo0.047619
ferret0.047619
LOWER IN clindamycin0.023810
LOWER IN ampicillin0.023810
LOWER IN vancomycin0.023810
LOWER IN ciprofloxacin0.023810
LOWER IN metronidazole0.023810
ciprofloxacin0.023810
ampicillin0.023810
vancomycin0.023810
metronidazole0.023810
clindamycin0.023810
Exp. ID User ID Description Date Region Flag Sequences
399amnon high in crohn's disease compared to ulcerative colitis in feces homo sapiens united states of america 2018-11-16v4No1 / 3
399amnonhigher in vancomycin treated mice compared to controls ( high in antibiotic vancomycin compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 5
399amnonhigher in metronidazole treated mice compared to controls ( high in antibiotic metronidazole compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 5
399amnonhigher in clindamycin treated mice compared to controls ( high in antibiotic clindamycin compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 5
399amnonhigher in ampicillin treated mice compared to controls ( high in antibiotic ampicillin compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 8
399amnondominant feces, united states of america, state of tennessee, zoological garden, ailurus fulgens, red panda2018-11-16v4No1 / 9
399amnondominant feces, united states of america, mustela putorius furo, ferret2018-11-16v4No1 / 9
399amnondominant feces, united states of america, state of tennessee, zoological garden, gorilla gorilla2018-11-16v4No1 / 11
399amnondominant feces, united states of america, research facility, mus musculus, mouse2018-11-18v4No1 / 12
399amnondominant feces, united states of america, state of tennessee, zoological garden, ovis aries, sheep2018-11-16v4No1 / 13
399amnondominant feces, united states of america, state of tennessee, zoological garden, sus scrofa, pig2018-11-16v4No1 / 13
399amnondominant feces, united states of america, research facility, oryctolagus cuniculus, rabbit2018-11-16v4No1 / 14
399amnondominant feces, united states of america, state of tennessee, zoological garden, pan troglodytes, chimpanzee2018-11-16v4No1 / 16
399amnoncommon feces, united states of america, mustela putorius furo, ferret2018-11-16v4No1 / 20
399amnondominant feces, united states of america, canis lupus familiaris, dog2018-11-16v4No1 / 20
399amnondominant feces, united states of america, state of tennessee, zoological garden, macaca mulatta, macaque2018-11-16v4No1 / 21
399amnoncommon feces, united states of america, state of tennessee, zoological garden, ailurus fulgens, red panda2018-11-16v4No1 / 22
399amnondominant feces, united states of america, state of tennessee, zoological garden, panthera leo, lion2018-11-16v4No1 / 23
399amnon high in crohn's disease compared to control in feces homo sapiens united states of america 2018-11-16v4No1 / 27
399amnondominant feces, united states of america, research facility, rattus norvegicus, rat2018-11-16v4No1 / 27
399amnondominant feces, united states of america, state of tennessee, zoological garden, loxodonta africana, african elephant2018-11-16v4No1 / 28
399amnon high in ulcerative colitis compared to control in feces homo sapiens united states of america 2018-11-16v4No1 / 36
399amnon high in ulcerative colitis compared to crohn's disease in feces homo sapiens united states of america 2018-11-16v4No1 / 47
399amnonhigher in ciprofloxacin treated mice compared to controls ( high in ciprofloxacin antibiotic compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 60
399amnoncommon feces, united states of america, state of tennessee, zoological garden, panthera leo, lion2018-11-16v4No1 / 79
399amnoncommon feces, united states of america, research facility, mus musculus, mouse2018-11-18v4No1 / 89
399amnoncommon feces, united states of america, canis lupus familiaris, dog2018-11-16v4No1 / 108
399amnonlower in metronidazole treated mice compared to controls ( high in control compared to antibiotic metronidazole in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 127
399amnonlower in ciprofloxacin treated mice compared to controls ( high in control compared to ciprofloxacin antibiotic in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 136
399amnon high in control compared to ulcerative colitis in feces homo sapiens united states of america 2018-11-16v4No1 / 180
399amnoncommon feces, united states of america, research facility, rattus norvegicus, rat2018-11-16v4No1 / 184
399amnonlower in vancomycin treated mice compared to controls ( high in control compared to antibiotic vancomycin in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 225
399amnoncommon feces, united states of america, state of tennessee, zoological garden, loxodonta africana, african elephant2018-11-16v4No1 / 252
399amnonlower in ampicillin treated mice compared to controls ( high in control compared to antibiotic ampicillin in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 263
399amnoncommon feces, united states of america, state of tennessee, zoological garden, sus scrofa, pig2018-11-16v4No1 / 319
399amnon high in control compared to crohn's disease in feces homo sapiens united states of america 2018-11-16v4No1 / 390
399amnonlower in clindamycin treated mice compared to controls ( high in control compared to antibiotic clindamycin in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 394
399amnoncommon feces, united states of america, state of tennessee, zoological garden, gorilla gorilla2018-11-16v4No1 / 395
399amnoncommon feces, united states of america, state of tennessee, zoological garden, macaca mulatta, macaque2018-11-16v4No1 / 404
399amnoncommon feces, united states of america, state of tennessee, zoological garden, pan troglodytes, chimpanzee2018-11-16v4No1 / 407
399amnoncommon feces, united states of america, state of tennessee, zoological garden, ovis aries, sheep2018-11-16v4No1 / 451
399amnoncommon feces, united states of america, research facility, oryctolagus cuniculus, rabbit2018-11-16v4No1 / 577

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