Experiment ID: 399

Field Description
namegut microbiota density influences host physiology and is shaped by host and microbial factors
sraprjna413199
datamd58bcd1d2307f9b6cc59dbbf639199e251
mapmd5459447b47c990bc5f91d513e3c1bfab2

Annotations for experiment:

term enrichment score
TermScore
state of tennessee0.262295
zoological garden0.101911
african elephant0.086957
ailurus fulgens0.086957
red panda0.086957
mustela putorius furo0.086957
ferret0.086957
loxodonta africana0.083333
panthera leo0.083333
lion0.083333
macaque0.080000
LOWER IN antibiotic0.078740
rabbit0.076923
pan troglodytes0.076923
chimpanzee0.074074
antibiotic0.072993
gorilla gorilla0.071429
macaca mulatta0.068966
oryctolagus cuniculus0.066667
rattus norvegicus0.062500
sheep0.058824
ovis aries0.055556
LOWER IN crohn's disease0.055556
sus scrofa0.054054
pig0.054054
crohn's disease0.054054
rat0.052632
LOWER IN ulcerative colitis0.052632
ulcerative colitis0.051282
LOWER IN clindamycin0.045455
LOWER IN ciprofloxacin0.045455
ciprofloxacin0.045455
clindamycin0.045455
LOWER IN ampicillin0.043478
vancomycin0.043478
LOWER IN vancomycin0.042553
ampicillin0.042553
dog0.041667
metronidazole0.041667
LOWER IN metronidazole0.040816
canis lupus familiaris0.038462
mouse0.029630
mus musculus0.026846
research facility0.011012
LOWER IN control0.009901
control0.009662
united states of america0.007067
homo sapiens0.006061
feces0.005208
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN clindamycin0.500000
african elephant0.500000
LOWER IN ciprofloxacin0.500000
ciprofloxacin0.500000
ailurus fulgens0.500000
red panda0.500000
mustela putorius furo0.500000
ferret0.500000
clindamycin0.500000
loxodonta africana0.333333
panthera leo0.333333
lion0.333333
macaque0.250000
LOWER IN ampicillin0.250000
vancomycin0.250000
rabbit0.200000
state of tennessee0.200000
pan troglodytes0.200000
LOWER IN vancomycin0.200000
ampicillin0.200000
chimpanzee0.166667
metronidazole0.166667
gorilla gorilla0.142857
LOWER IN metronidazole0.142857
macaca mulatta0.125000
oryctolagus cuniculus0.111111
rattus norvegicus0.090909
sheep0.076923
ovis aries0.066667
LOWER IN crohn's disease0.066667
sus scrofa0.062500
pig0.062500
crohn's disease0.062500
zoological garden0.058824
LOWER IN antibiotic0.058824
rat0.058824
LOWER IN ulcerative colitis0.058824
ulcerative colitis0.055556
antibiotic0.052632
dog0.037037
canis lupus familiaris0.032258
mouse0.015625
mus musculus0.014085
research facility0.005587
LOWER IN control0.005102
control0.004975
united states of america0.003546
homo sapiens0.003096
feces0.002611
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
united states of america1.000000
research facility0.380952
zoological garden0.380952
state of tennessee0.380952
mouse0.285714
mus musculus0.285714
control0.166667
LOWER IN control0.166667
homo sapiens0.142857
LOWER IN antibiotic0.119048
antibiotic0.119048
oryctolagus cuniculus0.047619
rabbit0.047619
ovis aries0.047619
sheep0.047619
pan troglodytes0.047619
chimpanzee0.047619
macaca mulatta0.047619
macaque0.047619
gorilla gorilla0.047619
LOWER IN crohn's disease0.047619
sus scrofa0.047619
pig0.047619
loxodonta africana0.047619
african elephant0.047619
rat0.047619
rattus norvegicus0.047619
LOWER IN ulcerative colitis0.047619
canis lupus familiaris0.047619
dog0.047619
panthera leo0.047619
lion0.047619
ulcerative colitis0.047619
crohn's disease0.047619
ailurus fulgens0.047619
red panda0.047619
mustela putorius furo0.047619
ferret0.047619
LOWER IN clindamycin0.023810
LOWER IN ampicillin0.023810
LOWER IN vancomycin0.023810
LOWER IN ciprofloxacin0.023810
LOWER IN metronidazole0.023810
ciprofloxacin0.023810
ampicillin0.023810
clindamycin0.023810
metronidazole0.023810
vancomycin0.023810
Number of experiments associating the term to the sequence
TermScore
feces1.000000
united states of america1.000000
oryctolagus cuniculus1.000000
rabbit1.000000
research facility1.000000
zoological garden1.000000
state of tennessee1.000000
ovis aries1.000000
sheep1.000000
pan troglodytes1.000000
chimpanzee1.000000
macaca mulatta1.000000
macaque1.000000
gorilla gorilla1.000000
mouse1.000000
mus musculus1.000000
control1.000000
LOWER IN clindamycin1.000000
LOWER IN antibiotic1.000000
homo sapiens1.000000
LOWER IN crohn's disease1.000000
sus scrofa1.000000
pig1.000000
LOWER IN ampicillin1.000000
loxodonta africana1.000000
african elephant1.000000
LOWER IN vancomycin1.000000
rat1.000000
rattus norvegicus1.000000
LOWER IN ulcerative colitis1.000000
LOWER IN ciprofloxacin1.000000
LOWER IN metronidazole1.000000
canis lupus familiaris1.000000
dog1.000000
panthera leo1.000000
lion1.000000
ciprofloxacin1.000000
LOWER IN control1.000000
antibiotic1.000000
ulcerative colitis1.000000
crohn's disease1.000000
ailurus fulgens1.000000
red panda1.000000
mustela putorius furo1.000000
ferret1.000000
ampicillin1.000000
clindamycin1.000000
metronidazole1.000000
vancomycin1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
399amnon high in crohn's disease compared to ulcerative colitis in feces united states of america homo sapiens 2018-11-16v41 / 3approvedNo
399amnonhigher in clindamycin treated mice compared to controls ( high in clindamycin antibiotic compared to control in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 5approvedNo
399amnonhigher in metronidazole treated mice compared to controls ( high in antibiotic metronidazole compared to control in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 5approvedNo
399amnonhigher in vancomycin treated mice compared to controls ( high in antibiotic vancomycin compared to control in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 5approvedNo
399amnonhigher in ampicillin treated mice compared to controls ( high in ampicillin antibiotic compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 8approvedNo
399amnondominant feces, united states of america, mustela putorius furo, ferret2018-11-16v41 / 9approvedNo
399amnondominant feces, united states of america, zoological garden, state of tennessee, ailurus fulgens, red panda2018-11-16v41 / 9approvedNo
399amnondominant feces, united states of america, zoological garden, state of tennessee, gorilla gorilla2018-11-16v41 / 11approvedNo
399amnondominant feces, united states of america, research facility, mouse, mus musculus2018-11-18v41 / 12approvedNo
399amnondominant feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v41 / 13approvedNo
399amnondominant feces, united states of america, zoological garden, state of tennessee, ovis aries, sheep2018-11-16v41 / 13approvedNo
399amnondominant feces, united states of america, oryctolagus cuniculus, rabbit, research facility2018-11-16v41 / 14approvedNo
399amnondominant pan troglodytes, chimpanzee, zoological garden, feces, united states of america, state of tennessee2018-11-16v41 / 16approvedNo
399amnondominant feces, united states of america, canis lupus familiaris, dog2018-11-16v41 / 20approvedNo
399amnoncommon feces, united states of america, mustela putorius furo, ferret2018-11-16v41 / 20approvedNo
399amnondominant feces, united states of america, zoological garden, state of tennessee, macaca mulatta, macaque2018-11-16v41 / 21approvedNo
399amnoncommon feces, united states of america, zoological garden, state of tennessee, ailurus fulgens, red panda2018-11-16v41 / 22approvedNo
399amnondominant feces, united states of america, zoological garden, panthera leo, lion, state of tennessee2018-11-16v41 / 23approvedNo
399amnondominant feces, united states of america, research facility, rat, rattus norvegicus2018-11-16v41 / 27approvedNo
399amnon high in crohn's disease compared to control in feces united states of america homo sapiens 2018-11-16v41 / 27approvedNo
399amnondominant feces, united states of america, loxodonta africana, african elephant, zoological garden, state of tennessee2018-11-16v41 / 28approvedNo
399amnon high in ulcerative colitis compared to control in feces united states of america homo sapiens 2018-11-16v41 / 36approvedNo
399amnon high in ulcerative colitis compared to crohn's disease in feces united states of america homo sapiens 2018-11-16v41 / 47approvedNo
399amnonhigher in ciprofloxacin treated mice compared to controls ( high in ciprofloxacin antibiotic compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 60approvedNo
399amnoncommon feces, united states of america, zoological garden, panthera leo, lion, state of tennessee2018-11-16v41 / 79approvedNo
399amnoncommon feces, united states of america, research facility, mouse, mus musculus2018-11-18v41 / 89approvedNo
399amnoncommon feces, united states of america, canis lupus familiaris, dog2018-11-16v41 / 108approvedNo
399amnonlower in metronidazole treated mice compared to controls ( high in control compared to antibiotic metronidazole in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 127approvedNo
399amnonlower in ciprofloxacin treated mice compared to controls ( high in control compared to ciprofloxacin antibiotic in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 136approvedNo
399amnon high in control compared to ulcerative colitis in feces united states of america homo sapiens 2018-11-16v41 / 180approvedNo
399amnoncommon feces, united states of america, research facility, rat, rattus norvegicus2018-11-16v41 / 184approvedNo
399amnonlower in vancomycin treated mice compared to controls ( high in control compared to antibiotic vancomycin in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 225approvedNo
399amnoncommon feces, united states of america, loxodonta africana, african elephant, zoological garden, state of tennessee2018-11-16v41 / 252approvedNo
399amnonlower in ampicillin treated mice compared to controls ( high in control compared to ampicillin antibiotic in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 263approvedNo
399amnoncommon feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v41 / 319approvedNo
399amnon high in control compared to crohn's disease in feces united states of america homo sapiens 2018-11-16v41 / 390approvedNo
399amnonlower in clindamycin treated mice compared to controls ( high in control compared to clindamycin antibiotic in feces united states of america research facility mouse mus musculus )2018-11-18v41 / 394approvedNo
399amnoncommon feces, united states of america, zoological garden, state of tennessee, gorilla gorilla2018-11-16v41 / 395approvedNo
399amnoncommon feces, united states of america, zoological garden, state of tennessee, macaca mulatta, macaque2018-11-16v41 / 404approvedNo
399amnoncommon pan troglodytes, chimpanzee, zoological garden, feces, united states of america, state of tennessee2018-11-16v41 / 407approvedNo
399amnoncommon feces, united states of america, zoological garden, state of tennessee, ovis aries, sheep2018-11-16v41 / 451approvedNo
399amnoncommon feces, united states of america, oryctolagus cuniculus, rabbit, research facility2018-11-16v41 / 577approvedNo

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