Experiment ID: 399

Field Description
namegut microbiota density influences host physiology and is shaped by host and microbial factors
sraprjna413199
datamd58bcd1d2307f9b6cc59dbbf639199e251
mapmd5459447b47c990bc5f91d513e3c1bfab2

Annotations for experiment:

term enrichment score
TermScore
state of tennessee0.262295
zoological garden0.207792
LOWER IN antibiotic0.114943
antibiotic0.108696
rabbit0.086957
pan troglodytes0.086957
chimpanzee0.086957
macaque0.086957
loxodonta africana0.086957
african elephant0.086957
panthera leo0.086957
lion0.086957
ailurus fulgens0.086957
red panda0.086957
mustela putorius furo0.086957
ferret0.086957
macaca mulatta0.083333
gorilla gorilla0.083333
oryctolagus cuniculus0.080000
sheep0.080000
ovis aries0.074074
rattus norvegicus0.071429
LOWER IN ulcerative colitis0.071429
ulcerative colitis0.071429
LOWER IN crohn's disease0.066667
sus scrofa0.066667
pig0.066667
crohn's disease0.066667
dog0.064516
rat0.060606
canis lupus familiaris0.057143
LOWER IN clindamycin0.045455
LOWER IN vancomycin0.045455
LOWER IN ciprofloxacin0.045455
ciprofloxacin0.045455
clindamycin0.045455
vancomycin0.045455
LOWER IN metronidazole0.044444
metronidazole0.044444
LOWER IN ampicillin0.043478
ampicillin0.043478
mouse0.038095
mus musculus0.033613
research facility0.020075
LOWER IN control0.016000
control0.015873
homo sapiens0.012346
united states of america0.010753
feces0.010000
Fraction of dbbact annotations with this term covered by the query
TermScore
rabbit0.500000
pan troglodytes0.500000
chimpanzee0.500000
macaque0.500000
LOWER IN clindamycin0.500000
loxodonta africana0.500000
african elephant0.500000
LOWER IN vancomycin0.500000
LOWER IN ciprofloxacin0.500000
panthera leo0.500000
lion0.500000
ciprofloxacin0.500000
ailurus fulgens0.500000
red panda0.500000
mustela putorius furo0.500000
ferret0.500000
clindamycin0.500000
vancomycin0.500000
macaca mulatta0.333333
gorilla gorilla0.333333
LOWER IN metronidazole0.333333
metronidazole0.333333
oryctolagus cuniculus0.250000
sheep0.250000
LOWER IN ampicillin0.250000
ampicillin0.250000
state of tennessee0.200000
ovis aries0.166667
zoological garden0.142857
rattus norvegicus0.142857
LOWER IN ulcerative colitis0.142857
ulcerative colitis0.142857
LOWER IN antibiotic0.111111
LOWER IN crohn's disease0.111111
sus scrofa0.111111
pig0.111111
crohn's disease0.111111
dog0.100000
antibiotic0.100000
rat0.083333
canis lupus familiaris0.071429
mouse0.020408
mus musculus0.017857
research facility0.010309
LOWER IN control0.008403
control0.008333
homo sapiens0.006452
united states of america0.005405
feces0.005025
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
united states of america1.000000
research facility0.380952
zoological garden0.380952
state of tennessee0.380952
mouse0.285714
mus musculus0.285714
control0.166667
LOWER IN control0.166667
homo sapiens0.142857
LOWER IN antibiotic0.119048
antibiotic0.119048
oryctolagus cuniculus0.047619
rabbit0.047619
ovis aries0.047619
sheep0.047619
pan troglodytes0.047619
chimpanzee0.047619
macaca mulatta0.047619
macaque0.047619
gorilla gorilla0.047619
LOWER IN crohn's disease0.047619
sus scrofa0.047619
pig0.047619
loxodonta africana0.047619
african elephant0.047619
rat0.047619
rattus norvegicus0.047619
LOWER IN ulcerative colitis0.047619
canis lupus familiaris0.047619
dog0.047619
panthera leo0.047619
lion0.047619
ulcerative colitis0.047619
crohn's disease0.047619
ailurus fulgens0.047619
red panda0.047619
mustela putorius furo0.047619
ferret0.047619
LOWER IN clindamycin0.023810
LOWER IN ampicillin0.023810
LOWER IN vancomycin0.023810
LOWER IN ciprofloxacin0.023810
LOWER IN metronidazole0.023810
ciprofloxacin0.023810
ampicillin0.023810
clindamycin0.023810
metronidazole0.023810
vancomycin0.023810
Exp. ID User ID Description Date Region Flag Sequences
399amnon high in crohn's disease compared to ulcerative colitis in feces united states of america homo sapiens 2018-11-16v4No1 / 3
399amnonhigher in clindamycin treated mice compared to controls ( high in clindamycin antibiotic compared to control in feces united states of america research facility mouse mus musculus )2018-11-18v4No1 / 5
399amnonhigher in metronidazole treated mice compared to controls ( high in antibiotic metronidazole compared to control in feces united states of america research facility mouse mus musculus )2018-11-18v4No1 / 5
399amnonhigher in vancomycin treated mice compared to controls ( high in antibiotic vancomycin compared to control in feces united states of america research facility mouse mus musculus )2018-11-18v4No1 / 5
399amnonhigher in ampicillin treated mice compared to controls ( high in ampicillin antibiotic compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 8
399amnonhighfreq feces, united states of america, mustela putorius furo, ferret2018-11-16v4No1 / 9
399amnonhighfreq feces, united states of america, zoological garden, state of tennessee, ailurus fulgens, red panda2018-11-16v4No1 / 9
399amnonhighfreq feces, united states of america, zoological garden, state of tennessee, gorilla gorilla2018-11-16v4No1 / 11
399amnonhighfreq feces, united states of america, research facility, mouse, mus musculus2018-11-18v4No1 / 12
399amnonhighfreq feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v4No1 / 13
399amnonhighfreq feces, united states of america, zoological garden, state of tennessee, ovis aries, sheep2018-11-16v4No1 / 13
399amnonhighfreq feces, united states of america, oryctolagus cuniculus, rabbit, research facility2018-11-16v4No1 / 14
399amnonhighfreq pan troglodytes, chimpanzee, zoological garden, feces, united states of america, state of tennessee2018-11-16v4No1 / 16
399amnonhighfreq feces, united states of america, canis lupus familiaris, dog2018-11-16v4No1 / 20
399amnoncommon feces, united states of america, mustela putorius furo, ferret2018-11-16v4No1 / 20
399amnonhighfreq feces, united states of america, zoological garden, state of tennessee, macaca mulatta, macaque2018-11-16v4No1 / 21
399amnoncommon feces, united states of america, zoological garden, state of tennessee, ailurus fulgens, red panda2018-11-16v4No1 / 22
399amnonhighfreq feces, united states of america, zoological garden, panthera leo, lion, state of tennessee2018-11-16v4No1 / 23
399amnonhighfreq feces, united states of america, research facility, rat, rattus norvegicus2018-11-16v4No1 / 27
399amnon high in crohn's disease compared to control in feces united states of america homo sapiens 2018-11-16v4No1 / 27
399amnonhighfreq feces, united states of america, loxodonta africana, african elephant, zoological garden, state of tennessee2018-11-16v4No1 / 28
399amnon high in ulcerative colitis compared to control in feces united states of america homo sapiens 2018-11-16v4No1 / 36
399amnon high in ulcerative colitis compared to crohn's disease in feces united states of america homo sapiens 2018-11-16v4No1 / 47
399amnonhigher in ciprofloxacin treated mice compared to controls ( high in ciprofloxacin antibiotic compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 60
399amnoncommon feces, united states of america, zoological garden, panthera leo, lion, state of tennessee2018-11-16v4No1 / 79
399amnoncommon feces, united states of america, research facility, mouse, mus musculus2018-11-18v4No1 / 89
399amnoncommon feces, united states of america, canis lupus familiaris, dog2018-11-16v4No1 / 108
399amnonlower in metronidazole treated mice compared to controls ( high in control compared to antibiotic metronidazole in feces united states of america research facility mouse mus musculus )2018-11-18v4No1 / 127
399amnonlower in ciprofloxacin treated mice compared to controls ( high in control compared to ciprofloxacin antibiotic in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 136
399amnon high in control compared to ulcerative colitis in feces united states of america homo sapiens 2018-11-16v4No1 / 180
399amnoncommon feces, united states of america, research facility, rat, rattus norvegicus2018-11-16v4No1 / 184
399amnonlower in vancomycin treated mice compared to controls ( high in control compared to antibiotic vancomycin in feces united states of america research facility mouse mus musculus )2018-11-18v4No1 / 225
399amnoncommon feces, united states of america, loxodonta africana, african elephant, zoological garden, state of tennessee2018-11-16v4No1 / 252
399amnonlower in ampicillin treated mice compared to controls ( high in control compared to ampicillin antibiotic in feces united states of america research facility mus musculus mouse )2018-11-18v4No1 / 263
399amnoncommon feces, united states of america, zoological garden, state of tennessee, sus scrofa, pig2018-11-16v4No1 / 319
399amnon high in control compared to crohn's disease in feces united states of america homo sapiens 2018-11-16v4No1 / 390
399amnonlower in clindamycin treated mice compared to controls ( high in control compared to clindamycin antibiotic in feces united states of america research facility mouse mus musculus )2018-11-18v4No1 / 394
399amnoncommon feces, united states of america, zoological garden, state of tennessee, gorilla gorilla2018-11-16v4No1 / 395
399amnoncommon feces, united states of america, zoological garden, state of tennessee, macaca mulatta, macaque2018-11-16v4No1 / 404
399amnoncommon pan troglodytes, chimpanzee, zoological garden, feces, united states of america, state of tennessee2018-11-16v4No1 / 407
399amnoncommon feces, united states of america, zoological garden, state of tennessee, ovis aries, sheep2018-11-16v4No1 / 451
399amnoncommon feces, united states of america, oryctolagus cuniculus, rabbit, research facility2018-11-16v4No1 / 577

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