dbBact

×

Experiment ID: 423

Field	Description
name	skin and gut microbiomes of a wild mammal respond to different environmental cues
qiita	11844
qiita	11360
sra	erp110215
sra	erp104266
datamd5	2a7f2281615277e752cf9881b1b70ce5
mapmd5	62212bbbc6cd554be135b005455f8ae7

Annotations for experiment:

term enrichment score

Term	Score
ukraine	0.666667
bank vole	0.666667
myodes glareolus	0.666667
no human contact	0.200000
chernobyl exclusion zone	0.200000
LOWER IN no human contact	0.200000
LOWER IN chernobyl exclusion zone	0.200000
LOWER IN human contact	0.181818
human contact	0.181818
LOWER IN male	0.068966
LOWER IN female	0.062500
skin	0.049587
male	0.038462
female	0.025641
feces	0.005168

Fraction of dbbact annotations with this term covered by the query

Term	Score
no human contact	0.500000
chernobyl exclusion zone	0.500000
ukraine	0.500000
bank vole	0.500000
myodes glareolus	0.500000
LOWER IN no human contact	0.500000
LOWER IN chernobyl exclusion zone	0.500000
LOWER IN human contact	0.333333
human contact	0.333333
LOWER IN male	0.047619
LOWER IN female	0.041667
skin	0.025641
male	0.022727
female	0.014286
feces	0.002611

Fraction of annotations for the query sequences containing the term

Term	Score
ukraine	1.000000
bank vole	1.000000
myodes glareolus	1.000000
skin	0.750000
feces	0.250000
no human contact	0.125000
chernobyl exclusion zone	0.125000
LOWER IN human contact	0.125000
human contact	0.125000
LOWER IN no human contact	0.125000
LOWER IN chernobyl exclusion zone	0.125000
male	0.125000
LOWER IN female	0.125000
female	0.125000
LOWER IN male	0.125000

Number of experiments associating the term to the sequence

Term	Score
no human contact	1.000000
chernobyl exclusion zone	1.000000
LOWER IN human contact	1.000000
skin	1.000000
ukraine	1.000000
bank vole	1.000000
myodes glareolus	1.000000
human contact	1.000000
LOWER IN no human contact	1.000000
LOWER IN chernobyl exclusion zone	1.000000
feces	1.000000
male	1.000000
LOWER IN female	1.000000
female	1.000000
LOWER IN male	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
423	amnon	high in female compared to male in skin ukraine bank vole myodes glareolus	2018-12-05	v4	1 / 6	approved	No
423	amnon	dominant skin, ukraine, bank vole, myodes glareolus	2018-12-05	v4	1 / 9	approved	No
423	amnon	dominant feces, ukraine, bank vole, myodes glareolus	2018-12-05	v4	1 / 18	approved	No
423	amnon	high in male compared to female in skin ukraine bank vole myodes glareolus	2018-12-05	v4	1 / 56	approved	No
423	amnon	common feces, ukraine, bank vole, myodes glareolus	2018-12-05	v4	1 / 187	approved	No
423	amnon	common skin, ukraine, bank vole, myodes glareolus	2018-12-05	v4	1 / 291	approved	No
423	amnon	high in human contact compared to no human contact chernobyl exclusion zone in skin ukraine bank vole myodes glareolus	2018-12-05	v4	1 / 334	approved	No
423	amnon	high in no human contact chernobyl exclusion zone compared to human contact in skin ukraine bank vole myodes glareolus	2018-12-05	v4	1 / 1229	approved	No

Problems / suggestions? Please email info AT dbbact DOT org