Experiment ID: 435

Field Description
namemarginal zinc deficiency and environmentally relevant concentrations of arsenic elicit combined effects on the gut microbiome
sraprjna473851
datamd55af06a1006766222dc895bc6dfe539e3
mapmd5241a1f70f90eb1f97f872503ae891b74

Annotations for experiment:

term enrichment score
TermScore
age 9 weeks0.555556
state of oregon0.333333
age 4 weeks0.260870
LOWER IN age 9 weeks0.200000
LOWER IN zinc deficiency0.200000
LOWER IN low zinc diet0.200000
zinc deficiency0.200000
low zinc diet0.200000
LOWER IN age 4 weeks0.181818
c57bl/60.133333
female0.064516
mouse0.040816
mus musculus0.035714
research facility0.021053
LOWER IN control0.016667
control0.016529
united states of america0.011364
feces0.010582
Fraction of dbbact annotations with this term covered by the query
TermScore
age 9 weeks0.500000
LOWER IN age 9 weeks0.500000
LOWER IN zinc deficiency0.500000
LOWER IN low zinc diet0.500000
zinc deficiency0.500000
low zinc diet0.500000
LOWER IN age 4 weeks0.333333
state of oregon0.200000
age 4 weeks0.200000
c57bl/60.071429
female0.033333
mouse0.020833
mus musculus0.018182
research facility0.010638
LOWER IN control0.008929
control0.008850
united states of america0.005714
feces0.005319
Fraction of annotations for the query sequences containing the term
TermScore
mus musculus1.000000
mouse1.000000
feces1.000000
research facility1.000000
c57bl/61.000000
female1.000000
united states of america1.000000
state of oregon1.000000
age 9 weeks0.625000
age 4 weeks0.375000
LOWER IN age 4 weeks0.125000
LOWER IN age 9 weeks0.125000
control0.125000
LOWER IN zinc deficiency0.125000
LOWER IN low zinc diet0.125000
zinc deficiency0.125000
low zinc diet0.125000
LOWER IN control0.125000
Exp. ID User ID Description Date Sequences
435amnonhighfreq mus musculus, mouse, feces, research facility, c57bl/6, female, united states of america, state of oregon, age 9 weeks2018-12-231 / 7
435amnonhighfreq mus musculus, mouse, feces, research facility, c57bl/6, female, united states of america, state of oregon, age 4 weeks2018-12-231 / 7
435amnon high in zinc deficiency low zinc diet compared to control in mus musculus mouse feces research facility c57bl/6 female united states of america state of oregon age 9 weeks 2018-12-231 / 7
435amnon high in control compared to zinc deficiency low zinc diet in mus musculus mouse feces research facility c57bl/6 female united states of america state of oregon age 9 weeks 2018-12-231 / 8
435amnoncommon mus musculus, mouse, feces, research facility, c57bl/6, female, united states of america, state of oregon, age 4 weeks2018-12-231 / 15
435amnonlower in mice at end of experiment compared to initial sample ( high in age 4 weeks compared to age 9 weeks in feces united states of america female research facility mus musculus c57bl/6 state of oregon mouse )2018-12-231 / 23
435amnoncommon mus musculus, mouse, feces, research facility, c57bl/6, female, united states of america, state of oregon, age 9 weeks2018-12-231 / 30
435amnonhigher in mice at end of experiment compared to initial sample ( high in age 9 weeks compared to age 4 weeks in mus musculus mouse feces research facility c57bl/6 female united states of america state of oregon )2018-12-231 / 73

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