Experiment ID: 458

Field Description
nameeffects of vendor and genetic background on the composition of the fecal microbiota of inbred mice
sraprjna263829
datamd51ff84013a53585330d61066d98e8699f
mapmd5ca61227fae9a4a2c6b200dd849b5602d

Annotations for experiment:

term enrichment score
TermScore
harlan sprague dawley0.300000
LOWER IN a/j0.300000
a/j0.300000
jackson laboratories0.187500
LOWER IN balb/c0.157895
balb/c0.157895
LOWER IN harlan spague dawley0.125000
age 24 weeks0.125000
LOWER IN age 24 weeks0.125000
LOWER IN age 3 weeks0.111111
age 3 weeks0.111111
LOWER IN jackson laboratories0.100000
c57bl/60.088235
LOWER IN c57bl/60.088235
age0.057143
LOWER IN age0.057143
mouse0.034483
female0.031250
mus musculus0.031250
research facility0.013514
united states of america0.008065
feces0.006349
Fraction of dbbact annotations with this term covered by the query
TermScore
harlan sprague dawley0.500000
LOWER IN a/j0.500000
a/j0.500000
LOWER IN harlan spague dawley0.500000
age 24 weeks0.500000
LOWER IN age 24 weeks0.500000
LOWER IN age 3 weeks0.250000
age 3 weeks0.250000
LOWER IN jackson laboratories0.166667
jackson laboratories0.166667
LOWER IN balb/c0.125000
balb/c0.125000
c57bl/60.055556
LOWER IN c57bl/60.055556
age0.047619
LOWER IN age0.047619
mouse0.017544
female0.015873
mus musculus0.015873
research facility0.006803
united states of america0.004049
feces0.003185
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
united states of america1.000000
female1.000000
research facility1.000000
mus musculus1.000000
mouse1.000000
harlan sprague dawley0.214286
c57bl/60.214286
LOWER IN balb/c0.214286
LOWER IN a/j0.214286
balb/c0.214286
a/j0.214286
LOWER IN c57bl/60.214286
jackson laboratories0.214286
LOWER IN jackson laboratories0.071429
LOWER IN harlan spague dawley0.071429
age0.071429
age 24 weeks0.071429
LOWER IN age 3 weeks0.071429
age 3 weeks0.071429
LOWER IN age0.071429
LOWER IN age 24 weeks0.071429
Exp. ID User ID Description Date Region Flag Sequences
458amnonhigh freq. in mice strains from jackson laboratories (dominant feces, united states of america, female, research facility, mus musculus, mouse, jackson laboratories)2019-01-11v4No1 / 14
458amnonhigh freq. in mice strains from harlan sprague dawley (dominant feces, united states of america, female, research facility, mus musculus, mouse, harlan sprague dawley)2019-01-11v4No1 / 21
458amnonnegatively correlated with age ( high in age 3 weeks compared to age age 24 weeks in feces united states of america female research facility mus musculus mouse )2019-01-11v4No1 / 31
458amnonpositively correlated with age ( high in age age 24 weeks compared to age 3 weeks in feces united states of america female research facility mus musculus mouse )2019-01-11v4No1 / 99
458amnoncommon in mice strains from jackson laboratories (common feces, united states of america, female, research facility, mus musculus, mouse, jackson laboratories)2019-01-11v4No1 / 129
458amnonhigher in BALB/c strain compared to A/J and C57BL/6 strains ( high in balb/c compared to a/j c57bl/6 in feces united states of america female research facility mus musculus mouse )2019-01-11v4No1 / 147
458amnoncommon in mice strains from harlan sprague dawley (common feces, united states of america, female, research facility, mus musculus, mouse, harlan sprague dawley)2019-01-11v4No1 / 184
458amnonlower in BALB/c strain compared to A/J and C57BL/6 strains ( high in a/j c57bl/6 compared to balb/c in feces united states of america female research facility mus musculus mouse )2019-01-11v4No1 / 224
458amnonlower in C57BL/6 strain compared to A/J and BALB/c strains ( high in balb/c a/j compared to c57bl/6 in feces united states of america female research facility mus musculus mouse )2019-01-11v4No1 / 237
458amnonlower in mice from hsd compared to jackson laboratories ( high in jackson laboratories compared to harlan spague dawley in feces united states of america female research facility mus musculus mouse )2019-01-11v4No1 / 267
458amnonhigh in A/J strain compared to BALB/c and C57BL/6 strains ( high in a/j compared to balb/c c57bl/6 in feces united states of america female research facility mus musculus mouse )2019-01-11v4No1 / 306
458amnonlower in A/J strain compared to BALB/c and C57BL/6 strains ( high in balb/c c57bl/6 compared to a/j in feces united states of america female research facility mus musculus mouse )2019-01-11v4No1 / 379
458amnonhigher in C57BL/6 strain compared to A/J and BALB/c strains ( high in c57bl/6 compared to balb/c a/j in feces united states of america female research facility mus musculus mouse )2019-01-11v4No1 / 380
458amnonhigher in mice from hsd compared to jackson laboratories ( high in harlan sprague dawley compared to jackson laboratories in feces united states of america female research facility mus musculus mouse )2019-01-11v4No1 / 644

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