Experiment ID: 458

Field Description
nameeffects of vendor and genetic background on the composition of the fecal microbiota of inbred mice
sraprjna263829
datamd51ff84013a53585330d61066d98e8699f
mapmd5ca61227fae9a4a2c6b200dd849b5602d

Annotations for experiment:

term enrichment score
TermScore
harlan sprague dawley0.300000
LOWER IN a/j0.300000
a/j0.300000
LOWER IN balb/c0.260870
LOWER IN c57bl/60.230769
jackson laboratories0.230769
balb/c0.157895
LOWER IN harlan spague dawley0.125000
age 24 weeks0.125000
LOWER IN age 3 weeks0.125000
LOWER IN age 24 weeks0.125000
LOWER IN jackson laboratories0.117647
age 3 weeks0.117647
c57bl/60.107143
LOWER IN age0.100000
female0.064516
age0.060606
mouse0.040816
mus musculus0.035714
research facility0.021053
united states of america0.011364
feces0.010582
Fraction of dbbact annotations with this term covered by the query
TermScore
harlan sprague dawley0.500000
LOWER IN a/j0.500000
a/j0.500000
LOWER IN harlan spague dawley0.500000
age 24 weeks0.500000
LOWER IN age 3 weeks0.500000
LOWER IN age 24 weeks0.500000
LOWER IN jackson laboratories0.333333
LOWER IN balb/c0.333333
age 3 weeks0.333333
LOWER IN c57bl/60.250000
jackson laboratories0.250000
LOWER IN age0.166667
balb/c0.125000
c57bl/60.071429
age0.052632
female0.033333
mouse0.020833
mus musculus0.018182
research facility0.010638
united states of america0.005714
feces0.005319
Fraction of annotations for the query sequences containing the term
TermScore
mus musculus1.000000
mouse1.000000
research facility1.000000
feces1.000000
female1.000000
united states of america1.000000
harlan sprague dawley0.214286
c57bl/60.214286
LOWER IN a/j0.214286
LOWER IN balb/c0.214286
balb/c0.214286
a/j0.214286
LOWER IN c57bl/60.214286
jackson laboratories0.214286
LOWER IN jackson laboratories0.071429
LOWER IN harlan spague dawley0.071429
age 24 weeks0.071429
age0.071429
LOWER IN age 3 weeks0.071429
age 3 weeks0.071429
LOWER IN age 24 weeks0.071429
LOWER IN age0.071429
Exp. ID User ID Description Date Sequences
458amnonhigh freq. in mice strains from jackson laboratories (highfreq mus musculus, mouse, research facility, feces, female, united states of america, jackson laboratories)2019-01-111 / 14
458amnonhigh freq. in mice strains from harlan sprague dawley (highfreq mus musculus, mouse, research facility, feces, female, united states of america, harlan sprague dawley)2019-01-111 / 21
458amnonnegatively correlated with age ( high in age 3 weeks compared to age 24 weeks age in mus musculus mouse research facility feces female united states of america )2019-01-111 / 31
458amnonpositively correlated with age ( high in age 24 weeks age compared to age 3 weeks in mus musculus mouse research facility feces female united states of america )2019-01-111 / 99
458amnoncommon in mice strains from jackson laboratories (common mus musculus, mouse, research facility, feces, female, united states of america, jackson laboratories)2019-01-111 / 129
458amnonhigher in BALB/c strain compared to A/J and C57BL/6 strains ( high in balb/c compared to a/j c57bl/6 in mus musculus mouse research facility feces female united states of america )2019-01-111 / 147
458amnoncommon in mice strains from harlan sprague dawley (common mus musculus, mouse, research facility, feces, female, united states of america, harlan sprague dawley)2019-01-111 / 184
458amnonlower in BALB/c strain compared to A/J and C57BL/6 strains ( high in a/j c57bl/6 compared to balb/c in mus musculus mouse research facility feces female united states of america )2019-01-111 / 224
458amnonlower in C57BL/6 strain compared to A/J and BALB/c strains ( high in a/j balb/c compared to c57bl/6 in mus musculus mouse research facility feces female united states of america )2019-01-111 / 237
458amnonlower in mice from hsd compared to jackson laboratories ( high in jackson laboratories compared to harlan spague dawley in mus musculus mouse research facility feces female united states of america )2019-01-111 / 267
458amnonhigh in A/J strain compared to BALB/c and C57BL/6 strains ( high in a/j compared to balb/c c57bl/6 in mus musculus mouse research facility feces female united states of america )2019-01-111 / 306
458amnonlower in A/J strain compared to BALB/c and C57BL/6 strains ( high in balb/c c57bl/6 compared to a/j in mus musculus mouse research facility feces female united states of america )2019-01-111 / 379
458amnonhigher in C57BL/6 strain compared to A/J and BALB/c strains ( high in c57bl/6 compared to a/j balb/c in mus musculus mouse research facility feces female united states of america )2019-01-111 / 380
458amnonhigher in mice from hsd compared to jackson laboratories ( high in harlan sprague dawley compared to jackson laboratories in mus musculus mouse research facility feces female united states of america )2019-01-111 / 644

Problems / suggestions? Please email info AT dbbact DOT org