Experiment ID: 458

Field Description
nameeffects of vendor and genetic background on the composition of the fecal microbiota of inbred mice
sraprjna263829
datamd51ff84013a53585330d61066d98e8699f
mapmd5ca61227fae9a4a2c6b200dd849b5602d

Annotations for experiment:

term enrichment score
TermScore
harlan sprague dawley0.300000
LOWER IN a/j0.300000
a/j0.300000
LOWER IN balb/c0.260870
LOWER IN c57bl/60.230769
jackson laboratories0.187500
balb/c0.157895
LOWER IN harlan spague dawley0.125000
age 24 weeks0.125000
LOWER IN age 3 weeks0.125000
LOWER IN age 24 weeks0.125000
age 3 weeks0.117647
LOWER IN jackson laboratories0.111111
LOWER IN age0.095238
c57bl/60.092308
age0.057143
mouse0.035714
female0.034483
mus musculus0.031746
research facility0.015625
united states of america0.008811
feces0.007273
Fraction of dbbact annotations with this term covered by the query
TermScore
harlan sprague dawley0.500000
LOWER IN a/j0.500000
a/j0.500000
LOWER IN harlan spague dawley0.500000
age 24 weeks0.500000
LOWER IN age 3 weeks0.500000
LOWER IN age 24 weeks0.500000
LOWER IN balb/c0.333333
age 3 weeks0.333333
LOWER IN jackson laboratories0.250000
LOWER IN c57bl/60.250000
jackson laboratories0.166667
LOWER IN age0.142857
balb/c0.125000
c57bl/60.058824
age0.047619
mouse0.018182
female0.017544
mus musculus0.016129
research facility0.007874
united states of america0.004425
feces0.003650
Fraction of annotations for the query sequences containing the term
TermScore
mus musculus1.000000
mouse1.000000
research facility1.000000
feces1.000000
female1.000000
united states of america1.000000
harlan sprague dawley0.214286
c57bl/60.214286
LOWER IN a/j0.214286
LOWER IN balb/c0.214286
balb/c0.214286
a/j0.214286
LOWER IN c57bl/60.214286
jackson laboratories0.214286
LOWER IN jackson laboratories0.071429
LOWER IN harlan spague dawley0.071429
age 24 weeks0.071429
age0.071429
LOWER IN age 3 weeks0.071429
age 3 weeks0.071429
LOWER IN age 24 weeks0.071429
LOWER IN age0.071429
Exp. ID User ID Description Date Region Flag Sequences
458amnonhigh freq. in mice strains from jackson laboratories (dominant mus musculus, mouse, research facility, feces, female, united states of america, jackson laboratories)2019-01-11v4No1 / 6
458amnonhigh freq. in mice strains from harlan sprague dawley (dominant mus musculus, mouse, research facility, feces, female, united states of america, harlan sprague dawley)2019-01-11v4No1 / 13
458amnonnegatively correlated with age ( high in age 3 weeks compared to age 24 weeks age in mus musculus mouse research facility feces female united states of america )2019-01-11v4No1 / 23
458amnonpositively correlated with age ( high in age 24 weeks age compared to age 3 weeks in mus musculus mouse research facility feces female united states of america )2019-01-11v4No1 / 91
458amnoncommon in mice strains from jackson laboratories (common mus musculus, mouse, research facility, feces, female, united states of america, jackson laboratories)2019-01-11v4No1 / 121
458amnonhigher in BALB/c strain compared to A/J and C57BL/6 strains ( high in balb/c compared to a/j c57bl/6 in mus musculus mouse research facility feces female united states of america )2019-01-11v4No1 / 139
458amnoncommon in mice strains from harlan sprague dawley (common mus musculus, mouse, research facility, feces, female, united states of america, harlan sprague dawley)2019-01-11v4No1 / 176
458amnonlower in BALB/c strain compared to A/J and C57BL/6 strains ( high in a/j c57bl/6 compared to balb/c in mus musculus mouse research facility feces female united states of america )2019-01-11v4No1 / 216
458amnonlower in C57BL/6 strain compared to A/J and BALB/c strains ( high in a/j balb/c compared to c57bl/6 in mus musculus mouse research facility feces female united states of america )2019-01-11v4No1 / 229
458amnonlower in mice from hsd compared to jackson laboratories ( high in jackson laboratories compared to harlan spague dawley in mus musculus mouse research facility feces female united states of america )2019-01-11v4No1 / 259
458amnonhigh in A/J strain compared to BALB/c and C57BL/6 strains ( high in a/j compared to balb/c c57bl/6 in mus musculus mouse research facility feces female united states of america )2019-01-11v4No1 / 298
458amnonlower in A/J strain compared to BALB/c and C57BL/6 strains ( high in balb/c c57bl/6 compared to a/j in mus musculus mouse research facility feces female united states of america )2019-01-11v4No1 / 371
458amnonhigher in C57BL/6 strain compared to A/J and BALB/c strains ( high in c57bl/6 compared to a/j balb/c in mus musculus mouse research facility feces female united states of america )2019-01-11v4No1 / 372
458amnonhigher in mice from hsd compared to jackson laboratories ( high in harlan sprague dawley compared to jackson laboratories in mus musculus mouse research facility feces female united states of america )2019-01-11v4No1 / 636

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