dbBact

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Experiment ID: 46

Field	Description
name	the effect of antibiotic mediated gut microbiome perturbation on diabetes development in nod mice.
qiita	10508
datamd5	69269ecf5615ef18125313f55094b0b3
mapmd5	55afc8e30baeb8db66a291d6f64f2339

Annotations for experiment:

term enrichment score

Term	Score
mus musculoides	0.666667
nyulmc	0.666667
nod/shiltj (no. 001976, jackson labs)	0.666667
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate	0.333333
pulsed antibiotic treatment, macrolide tylosin tartrate	0.333333
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.333333
sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.333333
LOWER IN antibiotic	0.105263
antibiotic	0.095238
male	0.043478
female	0.027778
research facility	0.011111
LOWER IN control	0.010101
control	0.009852
united states of america	0.007067
feces	0.005208

Fraction of dbbact annotations with this term covered by the query

Term	Score
mus musculoides	0.500000
nyulmc	0.500000
nod/shiltj (no. 001976, jackson labs)	0.500000
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate	0.500000
pulsed antibiotic treatment, macrolide tylosin tartrate	0.500000
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.500000
sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.500000
LOWER IN antibiotic	0.058824
antibiotic	0.052632
male	0.022727
female	0.014286
research facility	0.005587
LOWER IN control	0.005102
control	0.004975
united states of america	0.003546
feces	0.002611

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
mus musculoides	1.000000
united states of america	1.000000
nyulmc	1.000000
nod/shiltj (no. 001976, jackson labs)	1.000000
research facility	1.000000
male	0.500000
control	0.500000
LOWER IN antibiotic	0.500000
female	0.500000
antibiotic	0.500000
LOWER IN control	0.500000
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate	0.250000
pulsed antibiotic treatment, macrolide tylosin tartrate	0.250000
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.250000
sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.250000

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
male	1.000000
mus musculoides	1.000000
united states of america	1.000000
nyulmc	1.000000
nod/shiltj (no. 001976, jackson labs)	1.000000
research facility	1.000000
control	1.000000
LOWER IN antibiotic	1.000000
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate	1.000000
female	1.000000
pulsed antibiotic treatment, macrolide tylosin tartrate	1.000000
antibiotic	1.000000
LOWER IN control	1.000000
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt	1.000000
sub-therapeutic antibiotic treatment, penicillin v potassium salt	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
46	amnon	smj: higher in female mice feces treated with antibiotics ( high in sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic compared to control in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )	2017-01-12	v4	1 / 3	approved	No
46	amnon	smj: lower in female mice feces than treated with antibiotics ( high in control compared to sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )	2017-01-12	v4	1 / 10	approved	No
46	amnon	smj: higher in female mice feces treated with antibiotics ( high in antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate compared to control in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )	2017-01-12	v4	1 / 16	approved	No
46	amnon	smj: higher in mice feces with antiobiotics ( high in sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic compared to control in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility male )	2017-01-12	v4	1 / 20	approved	No
46	amnon	smj: lower in control mice feces than treated with antibiotics ( high in control compared to sub-therapeutic antibiotic treatment, penicillin v potassium salt antibiotic in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility male )	2017-01-12	v4	1 / 26	approved	No
46	amnon	smj: higher in mice feces treated with antibiotics ( high in pulsed antibiotic treatment, macrolide tylosin tartrate antibiotic compared to control in feces male mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility )	2017-01-12	v4	1 / 28	approved	No
46	amnon	smj: lower in control female mice than treated with antiobiotics ( high in control compared to antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate in feces mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility female )	2017-01-12	v4	1 / 94	approved	No
46	amnon	smj: lower in mice feces controls than antibiotics ( high in control compared to antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate in feces male mus musculoides united states of america nyulmc nod/shiltj (no. 001976, jackson labs) research facility )	2017-01-12	v4	1 / 134	approved	No

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