dbBact

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Experiment ID: 46

Field	Description
name	the effect of antibiotic mediated gut microbiome perturbation on diabetes development in nod mice.
qiita	10508
datamd5	69269ecf5615ef18125313f55094b0b3
mapmd5	55afc8e30baeb8db66a291d6f64f2339

Annotations for experiment:

term enrichment score

Term	Score
mus musculoides	0.666667
nyulmc	0.666667
nod/shiltj (no. 001976, jackson labs)	0.666667
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate	0.333333
pulsed antibiotic treatment, macrolide tylosin tartrate	0.333333
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.333333
sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.333333
LOWER IN antibiotic	0.111111
antibiotic	0.111111
male	0.057143
female	0.030769
research facility	0.013514
control	0.010695
LOWER IN control	0.010695
united states of america	0.008065
feces	0.006349

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate	0.500000
mus musculoides	0.500000
nyulmc	0.500000
nod/shiltj (no. 001976, jackson labs)	0.500000
pulsed antibiotic treatment, macrolide tylosin tartrate	0.500000
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.500000
sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.500000
LOWER IN antibiotic	0.062500
antibiotic	0.062500
male	0.030303
female	0.015873
research facility	0.006803
control	0.005405
LOWER IN control	0.005405
united states of america	0.004049
feces	0.003185

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
united states of america	1.000000
research facility	1.000000
mus musculoides	1.000000
nyulmc	1.000000
nod/shiltj (no. 001976, jackson labs)	1.000000
control	0.500000
LOWER IN antibiotic	0.500000
male	0.500000
female	0.500000
antibiotic	0.500000
LOWER IN control	0.500000
LOWER IN pulsed antibiotic treatment, macrolide tylosin tartrate	0.250000
pulsed antibiotic treatment, macrolide tylosin tartrate	0.250000
LOWER IN sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.250000
sub-therapeutic antibiotic treatment, penicillin v potassium salt	0.250000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
46	amnon	smj: higher in female mice feces treated with antibiotics ( high in antibiotic sub-therapeutic antibiotic treatment, penicillin v potassium salt compared to control in feces united states of america female research facility mus musculoides nyulmc nod/shiltj (no. 001976, jackson labs) )	2017-01-12	v4	No	1 / 3
46	amnon	smj: lower in female mice feces than treated with antibiotics ( high in control compared to antibiotic sub-therapeutic antibiotic treatment, penicillin v potassium salt in feces united states of america female research facility mus musculoides nyulmc nod/shiltj (no. 001976, jackson labs) )	2017-01-12	v4	No	1 / 10
46	amnon	smj: higher in female mice feces treated with antibiotics ( high in antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate compared to control in feces united states of america female research facility mus musculoides nyulmc nod/shiltj (no. 001976, jackson labs) )	2017-01-12	v4	No	1 / 16
46	amnon	smj: higher in mice feces with antiobiotics ( high in antibiotic sub-therapeutic antibiotic treatment, penicillin v potassium salt compared to control in feces united states of america research facility male mus musculoides nyulmc nod/shiltj (no. 001976, jackson labs) )	2017-01-12	v4	No	1 / 20
46	amnon	smj: lower in control mice feces than treated with antibiotics ( high in control compared to antibiotic sub-therapeutic antibiotic treatment, penicillin v potassium salt in feces united states of america research facility male mus musculoides nyulmc nod/shiltj (no. 001976, jackson labs) )	2017-01-12	v4	No	1 / 26
46	amnon	smj: higher in mice feces treated with antibiotics ( high in antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate compared to control in feces united states of america research facility male mus musculoides nyulmc nod/shiltj (no. 001976, jackson labs) )	2017-01-12	v4	No	1 / 28
46	amnon	smj: lower in control female mice than treated with antiobiotics ( high in control compared to antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate in feces united states of america female research facility mus musculoides nyulmc nod/shiltj (no. 001976, jackson labs) )	2017-01-12	v4	No	1 / 94
46	amnon	smj: lower in mice feces controls than antibiotics ( high in control compared to antibiotic pulsed antibiotic treatment, macrolide tylosin tartrate in feces united states of america research facility male mus musculoides nyulmc nod/shiltj (no. 001976, jackson labs) )	2017-01-12	v4	No	1 / 134

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