dbBact

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Experiment ID: 480

Field	Description
name	phylogenetic and functional potential links ph and n2o emissions in pasture soils
sra	srp080971
datamd5	097c636fd526725b8031fd5c5cc1afc0
mapmd5	d2d1cb69882a5df8784eaab2650507d2

Annotations for experiment:

term enrichment score

Term	Score
pasture	0.500000
new zealand	0.357143
ireland	0.300000
ph 6-7	0.300000
LOWER IN new zealand	0.200000
LOWER IN ireland	0.200000
LOWER IN ph 6-7	0.200000
LOWER IN ph	0.200000
ph	0.181818
LOWER IN ph 5-6	0.166667
ph 5-6	0.166667
farm	0.066667
soil	0.030303

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN new zealand	0.500000
LOWER IN ireland	0.500000
LOWER IN ph 6-7	0.500000
LOWER IN ph	0.500000
pasture	0.333333
ph	0.333333
new zealand	0.250000
ireland	0.250000
ph 6-7	0.250000
LOWER IN ph 5-6	0.250000
ph 5-6	0.250000
farm	0.034483
soil	0.015385

Fraction of annotations for the query sequences containing the term

Term	Score
soil	1.000000
pasture	1.000000
farm	1.000000
new zealand	0.625000
ireland	0.375000
ph 6-7	0.375000
LOWER IN new zealand	0.125000
LOWER IN ireland	0.125000
ph	0.125000
LOWER IN ph 5-6	0.125000
ph 5-6	0.125000
LOWER IN ph 6-7	0.125000
LOWER IN ph	0.125000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
480	amnon	dominant soil, pasture, farm, new zealand	2019-02-05	v4	No	1 / 5
480	amnon	high in ph 5-6 compared to ph 6-7 ph in soil pasture farm new zealand	2019-02-05	v4	No	1 / 5
480	amnon	dominant soil, pasture, farm, ireland	2019-02-05	v4	No	1 / 7
480	amnon	high in ph ph 6-7 compared to ph 5-6 in soil pasture farm new zealand	2019-02-05	v4	No	1 / 12
480	amnon	high in new zealand compared to ireland in soil pasture farm ph 6-7	2019-02-05	v4	No	1 / 19
480	amnon	high in ireland compared to new zealand in soil pasture farm ph 6-7	2019-02-05	v4	No	1 / 93
480	amnon	common soil, pasture, farm, ireland	2019-02-05	v4	No	1 / 815
480	amnon	common soil, pasture, farm, new zealand	2019-02-05	v4	No	1 / 969

Problems / suggestions? Please email info AT dbbact DOT org