dbBact

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Experiment ID: 480

Field	Description
name	phylogenetic and functional potential links ph and n2o emissions in pasture soils
sra	srp080971
datamd5	097c636fd526725b8031fd5c5cc1afc0
mapmd5	d2d1cb69882a5df8784eaab2650507d2

Annotations for experiment:

term enrichment score

Term	Score
pasture	0.500000
new zealand	0.357143
ireland	0.300000
ph 6-7	0.260870
LOWER IN new zealand	0.200000
LOWER IN ireland	0.200000
LOWER IN ph	0.200000
ph	0.181818
LOWER IN ph 6-7	0.181818
LOWER IN ph 5-6	0.153846
ph 5-6	0.153846
farm	0.064516
soil	0.029851

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN new zealand	0.500000
LOWER IN ireland	0.500000
LOWER IN ph	0.500000
pasture	0.333333
ph	0.333333
LOWER IN ph 6-7	0.333333
new zealand	0.250000
ireland	0.250000
ph 6-7	0.200000
LOWER IN ph 5-6	0.200000
ph 5-6	0.200000
farm	0.033333
soil	0.015152

Fraction of annotations for the query sequences containing the term

Term	Score
soil	1.000000
pasture	1.000000
farm	1.000000
new zealand	0.625000
ireland	0.375000
ph 6-7	0.375000
LOWER IN new zealand	0.125000
LOWER IN ireland	0.125000
ph	0.125000
LOWER IN ph 5-6	0.125000
ph 5-6	0.125000
LOWER IN ph 6-7	0.125000
LOWER IN ph	0.125000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
480	amnon	high in ph 5-6 compared to ph 6-7 ph in soil pasture farm new zealand	2019-02-05	v4	No	1 / -2
480	amnon	dominant soil, pasture, farm, new zealand	2019-02-05	v4	No	1 / -2
480	amnon	dominant soil, pasture, farm, ireland	2019-02-05	v4	No	1 / 0
480	amnon	high in ph ph 6-7 compared to ph 5-6 in soil pasture farm new zealand	2019-02-05	v4	No	1 / 5
480	amnon	high in new zealand compared to ireland in soil pasture farm ph 6-7	2019-02-05	v4	No	1 / 12
480	amnon	high in ireland compared to new zealand in soil pasture farm ph 6-7	2019-02-05	v4	No	1 / 86
480	amnon	common soil, pasture, farm, ireland	2019-02-05	v4	No	1 / 808
480	amnon	common soil, pasture, farm, new zealand	2019-02-05	v4	No	1 / 962

Problems / suggestions? Please email info AT dbbact DOT org