Experiment ID: 495

Field Description
name16s rrna amplicon sequencing characterization of caecal microbiome composition of broilers and free-range slow-growing chickens throughout their productive lifespan
sraprjeb29068
datamd54a5eea4a9286da97258f0d922dc86205
mapmd59cdf9d684da662fd5c264cbdca543e1a

Annotations for experiment:

term enrichment score
TermScore
free range chicken0.541667
broiler chicken0.367347
gallus gallus0.333333
chicken0.333333
age 6 weeks0.235294
age 3 weeks0.235294
kingdom of spain0.181818
age 12 weeks0.153846
age 4 days0.153846
age 3 days0.153846
age 8 weeks0.142857
age 2 weeks0.142857
age 4 weeks0.125000
caecum0.086957
farm0.086957
LOWER IN typhlitis0.083333
LOWER IN intestinal disease0.083333
LOWER IN broiler chicken0.083333
LOWER IN free range chicken0.083333
typhlitis0.083333
intestinal disease0.083333
LOWER IN disease0.076923
disease0.071429
LOWER IN control0.014184
control0.014085
Fraction of dbbact annotations with this term covered by the query
TermScore
free range chicken0.500000
LOWER IN typhlitis0.500000
LOWER IN intestinal disease0.500000
age 12 weeks0.500000
LOWER IN broiler chicken0.500000
LOWER IN free range chicken0.500000
age 4 days0.500000
typhlitis0.500000
intestinal disease0.500000
age 3 days0.500000
age 6 weeks0.333333
age 3 weeks0.333333
broiler chicken0.333333
age 8 weeks0.333333
age 2 weeks0.333333
LOWER IN disease0.250000
gallus gallus0.200000
chicken0.200000
age 4 weeks0.200000
disease0.166667
kingdom of spain0.100000
caecum0.045455
farm0.045455
LOWER IN control0.008403
control0.008333
Fraction of annotations for the query sequences containing the term
TermScore
gallus gallus1.000000
chicken1.000000
caecum1.000000
kingdom of spain1.000000
farm1.000000
free range chicken0.590909
broiler chicken0.409091
age 6 weeks0.181818
age 3 weeks0.181818
age 12 weeks0.090909
age 8 weeks0.090909
age 4 weeks0.090909
age 2 weeks0.090909
age 4 days0.090909
age 3 days0.090909
control0.045455
LOWER IN typhlitis0.045455
LOWER IN disease0.045455
LOWER IN intestinal disease0.045455
LOWER IN broiler chicken0.045455
LOWER IN free range chicken0.045455
typhlitis0.045455
LOWER IN control0.045455
disease0.045455
intestinal disease0.045455
Exp. ID User ID Description Date Region Flag Sequences
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v4No1 / 4
495amnonhighfreq gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v4No1 / 6
495amnonhighfreq gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v4No1 / 12
495amnonhighfreq gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v4No1 / 16
495amnonhighfreq gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v4No1 / 18
495amnonhighfreq gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v4No1 / 19
495amnonhighfreq gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v4No1 / 20
495amnonhighfreq gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v4No1 / 27
495amnonhighfreq gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v4No1 / 27
495amnonhighfreq gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v4No1 / 28
495amnon high in typhlitis disease intestinal disease compared to control in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v4No1 / 48
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v4No1 / 69
495amnon high in broiler chicken compared to free range chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v4No1 / 90
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v4No1 / 134
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v4No1 / 185
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v4No1 / 189
495amnon high in free range chicken compared to broiler chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v4No1 / 199
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v4No1 / 210
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v4No1 / 214
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v4No1 / 236
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v4No1 / 290
495amnon high in control compared to typhlitis disease intestinal disease in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v4No1 / 412

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