Experiment ID: 495

Field Description
name16s rrna amplicon sequencing characterization of caecal microbiome composition of broilers and free-range slow-growing chickens throughout their productive lifespan
sraprjeb29068
datamd54a5eea4a9286da97258f0d922dc86205
mapmd59cdf9d684da662fd5c264cbdca543e1a

Annotations for experiment:

term enrichment score
TermScore
free range chicken0.541667
broiler chicken0.211765
age 3 weeks0.210526
age 6 weeks0.190476
age 12 weeks0.153846
age 4 days0.153846
age 3 days0.153846
age 2 weeks0.142857
age 8 weeks0.133333
age 4 weeks0.125000
chicken0.117647
gallus gallus0.111111
kingdom of spain0.090909
LOWER IN typhlitis0.083333
LOWER IN free range chicken0.083333
typhlitis0.083333
LOWER IN broiler chicken0.068966
farm0.054054
caecum0.054054
LOWER IN intestinal disease0.040816
intestinal disease0.040816
LOWER IN disease0.020833
disease0.020833
control0.009662
LOWER IN control0.009662
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN typhlitis0.500000
free range chicken0.500000
age 12 weeks0.500000
LOWER IN free range chicken0.500000
age 4 days0.500000
typhlitis0.500000
age 3 days0.500000
age 2 weeks0.333333
age 3 weeks0.250000
age 8 weeks0.250000
age 6 weeks0.200000
age 4 weeks0.200000
broiler chicken0.142857
LOWER IN broiler chicken0.142857
chicken0.062500
gallus gallus0.058824
kingdom of spain0.047619
LOWER IN intestinal disease0.037037
intestinal disease0.037037
farm0.027778
caecum0.027778
LOWER IN disease0.013514
disease0.013514
control0.005405
LOWER IN control0.005405
Fraction of annotations for the query sequences containing the term
TermScore
farm1.000000
caecum1.000000
gallus gallus1.000000
kingdom of spain1.000000
chicken1.000000
free range chicken0.590909
broiler chicken0.409091
age 6 weeks0.181818
age 3 weeks0.181818
age 12 weeks0.090909
age 8 weeks0.090909
age 4 weeks0.090909
age 2 weeks0.090909
age 4 days0.090909
age 3 days0.090909
control0.045455
LOWER IN typhlitis0.045455
LOWER IN disease0.045455
LOWER IN intestinal disease0.045455
LOWER IN broiler chicken0.045455
LOWER IN free range chicken0.045455
typhlitis0.045455
disease0.045455
intestinal disease0.045455
LOWER IN control0.045455
Exp. ID User ID Description Date Region Flag Sequences
495amnoncommon farm, caecum, gallus gallus, kingdom of spain, chicken, broiler chicken, age 3 days2019-03-03v4No1 / 4
495amnondominant farm, caecum, gallus gallus, kingdom of spain, chicken, broiler chicken, age 6 weeks2019-03-03v4No1 / 6
495amnondominant farm, caecum, gallus gallus, kingdom of spain, chicken, broiler chicken, age 3 days2019-03-03v4No1 / 12
495amnondominant farm, caecum, gallus gallus, kingdom of spain, chicken, age 6 weeks, free range chicken2019-03-03v4No1 / 16
495amnondominant farm, caecum, gallus gallus, kingdom of spain, chicken, free range chicken, age 8 weeks2019-03-03v4No1 / 18
495amnondominant farm, caecum, gallus gallus, kingdom of spain, chicken, age 4 weeks, broiler chicken2019-03-03v4No1 / 19
495amnondominant farm, caecum, gallus gallus, kingdom of spain, chicken, free range chicken, age 4 days2019-03-03v4No1 / 20
495amnondominant farm, caecum, gallus gallus, kingdom of spain, chicken, free range chicken, age 12 weeks2019-03-03v4No1 / 27
495amnondominant farm, caecum, gallus gallus, kingdom of spain, chicken, age 3 weeks, free range chicken2019-03-03v4No1 / 27
495amnondominant farm, caecum, gallus gallus, kingdom of spain, chicken, broiler chicken, age 2 weeks2019-03-03v4No1 / 28
495amnon high in typhlitis disease intestinal disease compared to control in farm caecum gallus gallus kingdom of spain chicken free range chicken 2019-03-03v4No1 / 48
495amnoncommon farm, caecum, gallus gallus, kingdom of spain, chicken, free range chicken, age 4 days2019-03-03v4No1 / 69
495amnon high in broiler chicken compared to free range chicken in farm caecum gallus gallus kingdom of spain chicken age 3 weeks 2019-03-03v4No1 / 90
495amnoncommon farm, caecum, gallus gallus, kingdom of spain, chicken, broiler chicken, age 2 weeks2019-03-03v4No1 / 134
495amnoncommon farm, caecum, gallus gallus, kingdom of spain, chicken, age 4 weeks, broiler chicken2019-03-03v4No1 / 185
495amnoncommon farm, caecum, gallus gallus, kingdom of spain, chicken, free range chicken, age 8 weeks2019-03-03v4No1 / 189
495amnon high in free range chicken compared to broiler chicken in farm caecum gallus gallus kingdom of spain chicken age 3 weeks 2019-03-03v4No1 / 199
495amnoncommon farm, caecum, gallus gallus, kingdom of spain, chicken, broiler chicken, age 6 weeks2019-03-03v4No1 / 210
495amnoncommon farm, caecum, gallus gallus, kingdom of spain, chicken, free range chicken, age 12 weeks2019-03-03v4No1 / 214
495amnoncommon farm, caecum, gallus gallus, kingdom of spain, chicken, age 3 weeks, free range chicken2019-03-03v4No1 / 236
495amnoncommon farm, caecum, gallus gallus, kingdom of spain, chicken, age 6 weeks, free range chicken2019-03-03v4No1 / 290
495amnon high in control compared to typhlitis disease intestinal disease in farm caecum gallus gallus kingdom of spain chicken free range chicken 2019-03-03v4No1 / 412

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