dbBact

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Experiment ID: 528

Field	Description
name	racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy
sra	prjna326441
datamd5	79934adc795c461b5fed0546476652d6
mapmd5	ab5695ea430ebafb56751c572e64cd79

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN african	0.333333
african	0.333333
LOWER IN african american	0.285714
vagina	0.285714
caucasian	0.250000
LOWER IN caucasian	0.250000
african american	0.250000
pregnancy	0.200000
female	0.044444
homo sapiens	0.010050
united states of america	0.009479

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN african	0.500000
african	0.500000
LOWER IN african american	0.333333
caucasian	0.250000
LOWER IN caucasian	0.250000
african american	0.250000
vagina	0.166667
pregnancy	0.111111
female	0.022727
homo sapiens	0.005051
united states of america	0.004762

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
female	1.000000
vagina	1.000000
pregnancy	1.000000
united states of america	1.000000
caucasian	0.250000
LOWER IN african	0.250000
LOWER IN african american	0.250000
LOWER IN caucasian	0.250000
african american	0.250000
african	0.250000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
528	amnon	common homo sapiens, female, vagina, pregnancy, united states of america	2019-07-14	v1	No	1 / 4
528	amnon	dominant homo sapiens, female, vagina, pregnancy, united states of america	2019-07-14	v1	No	1 / 15
528	amnon	high in african american african compared to caucasian in united states of america pregnancy vagina female homo sapiens	2019-07-14	v1	No	1 / 33
528	amnon	high in caucasian compared to african african american in homo sapiens female vagina pregnancy united states of america	2019-07-14	v1	No	1 / 37

Problems / suggestions? Please email info AT dbbact DOT org