Experiment ID: 535

Field Description
namedeciphering the complex interplay between microbiota, hpv, inflammation and cancer through cervicovaginal metabolic profiling
sraprjna518153
doihttps://doi.org/10.1016/j.ebiom.2019.04.028
datamd5664052bd3b6160d437317463fda9869e
mapmd514ecb5f6aca60ae26937360b66313a71

Annotations for experiment:

term enrichment score
TermScore
phoenix0.666667
dysplasia of cervix0.428571
state of arizona0.400000
invasive carcinoma0.333333
invasive cervical carcinoma0.333333
cervical carcinoma0.333333
vagina0.285714
LOWER IN dysplasia of cervix0.200000
female0.058824
adult0.025000
control0.015789
LOWER IN control0.015267
homo sapiens0.012500
united states of america0.010695
Fraction of dbbact annotations with this term covered by the query
TermScore
phoenix0.500000
invasive carcinoma0.500000
invasive cervical carcinoma0.500000
cervical carcinoma0.500000
dysplasia of cervix0.500000
LOWER IN dysplasia of cervix0.500000
state of arizona0.250000
vagina0.166667
female0.030303
adult0.012658
LOWER IN control0.008130
control0.008065
homo sapiens0.006289
united states of america0.005376
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
vagina1.000000
female1.000000
adult1.000000
united states of america1.000000
phoenix1.000000
state of arizona1.000000
dysplasia of cervix0.375000
control0.375000
invasive carcinoma0.250000
invasive cervical carcinoma0.250000
cervical carcinoma0.250000
LOWER IN dysplasia of cervix0.125000
LOWER IN control0.125000
Exp. ID User ID Description Date Region Flag Sequences
535amnoncommon in healthy adult vaginal samples (common homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, control)2019-07-25v4No1 / 7
535amnon high in dysplasia of cervix compared to control in homo sapiens vagina female adult united states of america phoenix state of arizona 2019-07-25v4No1 / 9
535amnonhigh freq. in healthy adult vaginal samples (highfreq homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, control)2019-07-25v4No1 / 11
535amnonhcommon in adult vaginal samples with cervical dysplasia (common homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, dysplasia of cervix)2019-07-25v4No1 / 11
535amnoncommon in adult vaginal samples with ICC (common homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, invasive carcinoma, invasive cervical carcinoma, cervical carcinoma)2019-07-25v4No1 / 11
535amnonhigh freq. in adult vaginal samples with cervical dysplasia (highfreq homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, dysplasia of cervix)2019-07-25v4No1 / 16
535amnon high in control compared to dysplasia of cervix in homo sapiens vagina female adult united states of america phoenix state of arizona 2019-07-25v4No1 / 16
535amnonhigh freq. in adult vaginal samples with ICC (highfreq homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, invasive carcinoma, invasive cervical carcinoma, cervical carcinoma)2019-07-25v4No1 / 20

Problems / suggestions? Please email info AT dbbact DOT org