Experiment ID: 537

Field Description
nameeffects of the captive and wild environment on diversity of the gut microbiome of deer mice (peromyscus maniculatus)
srasrp140555
doihttps://doi.org/10.1038/s41396-019-0345-8
datamd5de661bf0dfeef0c7071de09cb830880d
mapmd5b58d1c46b3edc48865d609e0f0fbecb0

Annotations for experiment:

term enrichment score
TermScore
peromyscus maniculatus0.666667
deer mice0.666667
algonquin provincial park0.666667
age 3-5 weeks0.500000
province of ontario0.285714
captive0.086957
LOWER IN captive0.074074
wild0.071429
canada0.064516
LOWER IN wild0.062500
research facility0.012195
LOWER IN research facility0.011905
feces0.005780
Fraction of dbbact annotations with this term covered by the query
TermScore
peromyscus maniculatus0.500000
deer mice0.500000
algonquin provincial park0.500000
age 3-5 weeks0.333333
province of ontario0.166667
LOWER IN captive0.047619
captive0.047619
wild0.038462
LOWER IN wild0.038462
canada0.033333
LOWER IN research facility0.006173
research facility0.006173
feces0.002899
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
canada1.000000
peromyscus maniculatus1.000000
deer mice1.000000
age 3-5 weeks1.000000
province of ontario1.000000
algonquin provincial park1.000000
wild0.500000
research facility0.500000
captive0.500000
LOWER IN captive0.166667
LOWER IN research facility0.166667
LOWER IN wild0.166667
Number of experiments associating the term to the sequence
TermScore
feces1.000000
canada1.000000
peromyscus maniculatus1.000000
deer mice1.000000
age 3-5 weeks1.000000
province of ontario1.000000
algonquin provincial park1.000000
wild1.000000
LOWER IN captive1.000000
LOWER IN research facility1.000000
research facility1.000000
captive1.000000
LOWER IN wild1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
537amnonhigh freq. in feces of wild caught deer mice feces (dominant feces, canada, peromyscus maniculatus, deer mice, age 3-5 weeks, province of ontario, algonquin provincial park, wild)2019-07-28v31 / 10approvedNo
537amnonhigh freq. in feces of captive grown deer mice feces (dominant feces, canada, peromyscus maniculatus, deer mice, age 3-5 weeks, province of ontario, algonquin provincial park, research facility, captive)2019-07-28v31 / 19approvedNo
537amnonhigher in feces of deer mice grown in captivity compared to wild caught ( high in research facility captive compared to wild in feces canada peromyscus maniculatus deer mice age 3-5 weeks province of ontario algonquin provincial park )2019-07-28v31 / 96approvedNo
537amnoncommon in feces of captive grown deer mice feces (common feces, canada, peromyscus maniculatus, deer mice, age 3-5 weeks, province of ontario, algonquin provincial park, research facility, captive)2019-07-28v31 / 121approvedNo
537amnoncommon in feces of wild caught deer mice feces (common feces, canada, peromyscus maniculatus, deer mice, age 3-5 weeks, province of ontario, algonquin provincial park, wild)2019-07-28v31 / 163approvedNo
537amnonlower in feces of deer mice grown in captivity compared to wild caught ( high in wild compared to captive research facility in feces canada peromyscus maniculatus deer mice age 3-5 weeks province of ontario algonquin provincial park )2019-07-28v31 / 358approvedNo

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