Experiment ID: 538

Field Description
namecomparison of co-housing and littermate methods for microbiota standardization in mouse models
doihttps://doi.org/10.1016/j.celrep.2019.04.023
sraprjeb28381
mapmd526b482786bf15e45433bc9f62e160e5a
datamd537e52a790ce7fac2243c5614981bb576

Annotations for experiment:

term enrichment score
TermScore
age 8 weeks0.500000
taconic farms0.333333
terminal ileum0.320000
jackson laboratories0.285714
right colon0.242424
ileum0.177778
LOWER IN taconic farms0.171429
LOWER IN jackson laboratories0.157895
LOWER IN terminal ileum0.133333
canada0.133333
c57bl/60.125000
LOWER IN right colon0.111111
LOWER IN ileum0.095238
colon0.094118
LOWER IN feces0.093023
LOWER IN colon0.076923
mouse0.040000
mus musculus0.035088
research facility0.020408
feces0.010121
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN terminal ileum0.500000
age 8 weeks0.333333
terminal ileum0.333333
LOWER IN taconic farms0.333333
LOWER IN jackson laboratories0.250000
taconic farms0.250000
right colon0.200000
jackson laboratories0.200000
LOWER IN right colon0.200000
ileum0.125000
LOWER IN ileum0.125000
LOWER IN colon0.076923
canada0.071429
c57bl/60.066667
LOWER IN feces0.066667
colon0.055556
mouse0.020408
mus musculus0.017857
research facility0.010309
feces0.005128
Fraction of annotations for the query sequences containing the term
TermScore
canada1.000000
age 8 weeks1.000000
c57bl/61.000000
research facility1.000000
mouse1.000000
mus musculus1.000000
jackson laboratories0.500000
taconic farms0.500000
feces0.384615
right colon0.307692
colon0.307692
terminal ileum0.307692
ileum0.307692
LOWER IN feces0.153846
LOWER IN taconic farms0.115385
LOWER IN jackson laboratories0.115385
LOWER IN right colon0.076923
LOWER IN colon0.076923
LOWER IN terminal ileum0.076923
LOWER IN ileum0.076923
Exp. ID User ID Description Date Region Flag Sequences
538amnonhighfreq feces, taconic farms, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 11
538amnonhighfreq jackson laboratories, feces, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 12
538amnonhighfreq taconic farms, right colon, colon, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 17
538amnonhighfreq terminal ileum, ileum, taconic farms, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 18
538amnonhighfreq right colon, colon, jackson laboratories, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 18
538amnonhighfreq jackson laboratories, terminal ileum, ileum, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 22
538amnon high in feces compared to right colon colon in canada age 8 weeks jackson laboratories c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 22
538amnon high in feces compared to terminal ileum ileum in taconic farms canada age 8 weeks c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 23
538amnon high in feces compared to terminal ileum ileum in canada age 8 weeks jackson laboratories c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 25
538amnon high in feces compared to right colon colon in taconic farms canada age 8 weeks c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 27
538amnon high in terminal ileum ileum compared to feces in taconic farms canada age 8 weeks c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 41
538amnon high in right colon colon compared to feces in taconic farms canada age 8 weeks c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 51
538amnon high in taconic farms compared to jackson laboratories in terminal ileum ileum canada age 8 weeks c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 104
538amnoncommon jackson laboratories, feces, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 108
538amnon high in taconic farms compared to jackson laboratories in right colon colon canada age 8 weeks c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 108
538amnon high in jackson laboratories compared to taconic farms in feces canada age 8 weeks c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 110
538amnon high in terminal ileum ileum compared to feces in canada age 8 weeks jackson laboratories c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 119
538amnoncommon feces, taconic farms, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 120
538amnoncommon taconic farms, right colon, colon, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 130
538amnoncommon terminal ileum, ileum, taconic farms, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 132
538amnon high in taconic farms compared to jackson laboratories in feces canada age 8 weeks c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 135
538amnon high in right colon colon compared to feces in canada age 8 weeks jackson laboratories c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 140
538amnon high in jackson laboratories compared to taconic farms in terminal ileum ileum canada age 8 weeks c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 154
538amnon high in jackson laboratories compared to taconic farms in right colon colon canada age 8 weeks c57bl/6 research facility mouse mus musculus 2019-07-29v4No1 / 172
538amnoncommon jackson laboratories, terminal ileum, ileum, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 182
538amnoncommon right colon, colon, jackson laboratories, canada, age 8 weeks, c57bl/6, research facility, mouse, mus musculus2019-07-30v4No1 / 186

Problems / suggestions? Please email info AT dbbact DOT org