Experiment ID: 538

Field Description
namecomparison of co-housing and littermate methods for microbiota standardization in mouse models
sraprjeb28381
doihttps://doi.org/10.1016/j.celrep.2019.04.023
datamd537e52a790ce7fac2243c5614981bb576
mapmd526b482786bf15e45433bc9f62e160e5a

Annotations for experiment:

term enrichment score
TermScore
age 8 weeks0.500000
taconic farms0.333333
terminal ileum0.320000
jackson laboratories0.285714
right colon0.242424
ileum0.177778
LOWER IN taconic farms0.171429
LOWER IN jackson laboratories0.157895
LOWER IN terminal ileum0.133333
canada0.133333
c57bl/60.125000
LOWER IN right colon0.111111
LOWER IN ileum0.095238
LOWER IN feces0.093023
colon0.089888
LOWER IN colon0.074074
mouse0.040000
mus musculus0.035088
research facility0.020408
feces0.010020
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN terminal ileum0.500000
age 8 weeks0.333333
terminal ileum0.333333
LOWER IN taconic farms0.333333
taconic farms0.250000
LOWER IN jackson laboratories0.250000
jackson laboratories0.200000
right colon0.200000
LOWER IN right colon0.200000
ileum0.125000
LOWER IN ileum0.125000
canada0.071429
LOWER IN colon0.071429
c57bl/60.066667
LOWER IN feces0.066667
colon0.052632
mouse0.020408
mus musculus0.017857
research facility0.010309
feces0.005076
Fraction of annotations for the query sequences containing the term
TermScore
mus musculus1.000000
mouse1.000000
research facility1.000000
c57bl/61.000000
age 8 weeks1.000000
canada1.000000
jackson laboratories0.500000
taconic farms0.500000
feces0.384615
colon0.307692
right colon0.307692
ileum0.307692
terminal ileum0.307692
LOWER IN feces0.153846
LOWER IN taconic farms0.115385
LOWER IN jackson laboratories0.115385
LOWER IN colon0.076923
LOWER IN right colon0.076923
LOWER IN ileum0.076923
LOWER IN terminal ileum0.076923
Exp. ID User ID Description Date Region Flag Sequences
538amnonhighfreq mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, taconic farms, feces2019-07-30v4No1 / 11
538amnonhighfreq mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, feces, jackson laboratories2019-07-30v4No1 / 12
538amnonhighfreq mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, colon, right colon, taconic farms2019-07-30v4No1 / 17
538amnonhighfreq mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, jackson laboratories, colon, right colon2019-07-30v4No1 / 18
538amnonhighfreq mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, taconic farms, ileum, terminal ileum2019-07-30v4No1 / 18
538amnon high in feces compared to colon right colon in mus musculus mouse research facility c57bl/6 jackson laboratories age 8 weeks canada 2019-07-29v4No1 / 22
538amnonhighfreq mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, ileum, terminal ileum, jackson laboratories2019-07-30v4No1 / 22
538amnon high in feces compared to ileum terminal ileum in mus musculus mouse research facility c57bl/6 age 8 weeks canada taconic farms 2019-07-29v4No1 / 23
538amnon high in feces compared to ileum terminal ileum in mus musculus mouse research facility c57bl/6 jackson laboratories age 8 weeks canada 2019-07-29v4No1 / 25
538amnon high in feces compared to colon right colon in mus musculus mouse research facility c57bl/6 age 8 weeks canada taconic farms 2019-07-29v4No1 / 27
538amnon high in ileum terminal ileum compared to feces in mus musculus mouse research facility c57bl/6 age 8 weeks canada taconic farms 2019-07-29v4No1 / 41
538amnon high in colon right colon compared to feces in mus musculus mouse research facility c57bl/6 age 8 weeks canada taconic farms 2019-07-29v4No1 / 51
538amnon high in taconic farms compared to jackson laboratories in mus musculus mouse research facility c57bl/6 age 8 weeks canada ileum terminal ileum 2019-07-29v4No1 / 104
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, feces, jackson laboratories2019-07-30v4No1 / 108
538amnon high in taconic farms compared to jackson laboratories in mus musculus mouse research facility c57bl/6 age 8 weeks canada colon right colon 2019-07-29v4No1 / 108
538amnon high in jackson laboratories compared to taconic farms in mus musculus mouse research facility c57bl/6 age 8 weeks canada feces 2019-07-29v4No1 / 110
538amnon high in ileum terminal ileum compared to feces in mus musculus mouse research facility c57bl/6 jackson laboratories age 8 weeks canada 2019-07-29v4No1 / 119
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, taconic farms, feces2019-07-30v4No1 / 120
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, colon, right colon, taconic farms2019-07-30v4No1 / 130
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, taconic farms, ileum, terminal ileum2019-07-30v4No1 / 132
538amnon high in taconic farms compared to jackson laboratories in mus musculus mouse research facility c57bl/6 age 8 weeks canada feces 2019-07-29v4No1 / 135
538amnon high in colon right colon compared to feces in mus musculus mouse research facility c57bl/6 jackson laboratories age 8 weeks canada 2019-07-29v4No1 / 140
538amnon high in jackson laboratories compared to taconic farms in mus musculus mouse research facility c57bl/6 age 8 weeks canada ileum terminal ileum 2019-07-29v4No1 / 154
538amnon high in jackson laboratories compared to taconic farms in mus musculus mouse research facility c57bl/6 age 8 weeks canada colon right colon 2019-07-29v4No1 / 172
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, ileum, terminal ileum, jackson laboratories2019-07-30v4No1 / 182
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, jackson laboratories, colon, right colon2019-07-30v4No1 / 186

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