Experiment ID: 538

Field Description
namecomparison of co-housing and littermate methods for microbiota standardization in mouse models
sraprjeb28381
doihttps://doi.org/10.1016/j.celrep.2019.04.023
datamd537e52a790ce7fac2243c5614981bb576
mapmd526b482786bf15e45433bc9f62e160e5a

Annotations for experiment:

term enrichment score
TermScore
age 8 weeks0.400000
taconic farms0.333333
terminal ileum0.275862
right colon0.242424
jackson laboratories0.222222
LOWER IN taconic farms0.157895
LOWER IN jackson laboratories0.127660
LOWER IN terminal ileum0.117647
LOWER IN right colon0.111111
c57bl/60.095238
ileum0.094118
colon0.076190
LOWER IN ileum0.064516
canada0.064516
LOWER IN colon0.055556
mouse0.032258
mus musculus0.029412
research facility0.012270
feces0.005754
LOWER IN feces0.005690
Fraction of dbbact annotations with this term covered by the query
TermScore
age 8 weeks0.250000
terminal ileum0.250000
LOWER IN taconic farms0.250000
taconic farms0.250000
LOWER IN terminal ileum0.250000
right colon0.200000
LOWER IN right colon0.200000
jackson laboratories0.142857
LOWER IN jackson laboratories0.142857
ileum0.055556
LOWER IN ileum0.055556
c57bl/60.050000
colon0.043478
LOWER IN colon0.043478
canada0.033333
mouse0.016393
mus musculus0.014925
research facility0.006173
LOWER IN feces0.002899
feces0.002899
Fraction of annotations for the query sequences containing the term
TermScore
mus musculus1.000000
mouse1.000000
research facility1.000000
c57bl/61.000000
age 8 weeks1.000000
canada1.000000
jackson laboratories0.500000
taconic farms0.500000
feces0.384615
colon0.307692
right colon0.307692
ileum0.307692
terminal ileum0.307692
LOWER IN feces0.153846
LOWER IN taconic farms0.115385
LOWER IN jackson laboratories0.115385
LOWER IN colon0.076923
LOWER IN right colon0.076923
LOWER IN ileum0.076923
LOWER IN terminal ileum0.076923
Number of experiments associating the term to the sequence
TermScore
mus musculus1.000000
mouse1.000000
research facility1.000000
c57bl/61.000000
age 8 weeks1.000000
canada1.000000
jackson laboratories1.000000
colon1.000000
right colon1.000000
ileum1.000000
terminal ileum1.000000
LOWER IN taconic farms1.000000
LOWER IN feces1.000000
feces1.000000
taconic farms1.000000
LOWER IN jackson laboratories1.000000
LOWER IN colon1.000000
LOWER IN right colon1.000000
LOWER IN ileum1.000000
LOWER IN terminal ileum1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
538amnondominant mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, taconic farms, feces2019-07-30v41 / 11approvedNo
538amnondominant mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, feces, jackson laboratories2019-07-30v41 / 12approvedNo
538amnondominant mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, colon, right colon, taconic farms2019-07-30v41 / 17approvedNo
538amnondominant mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, jackson laboratories, colon, right colon2019-07-30v41 / 18approvedNo
538amnondominant mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, taconic farms, ileum, terminal ileum2019-07-30v41 / 18approvedNo
538amnondominant mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, ileum, terminal ileum, jackson laboratories2019-07-30v41 / 22approvedNo
538amnon high in feces compared to colon right colon in mus musculus mouse research facility c57bl/6 jackson laboratories age 8 weeks canada 2019-07-29v41 / 22approvedNo
538amnon high in feces compared to ileum terminal ileum in mus musculus mouse research facility c57bl/6 age 8 weeks canada taconic farms 2019-07-29v41 / 23approvedNo
538amnon high in feces compared to ileum terminal ileum in mus musculus mouse research facility c57bl/6 jackson laboratories age 8 weeks canada 2019-07-29v41 / 25approvedNo
538amnon high in feces compared to colon right colon in mus musculus mouse research facility c57bl/6 age 8 weeks canada taconic farms 2019-07-29v41 / 27approvedNo
538amnon high in ileum terminal ileum compared to feces in mus musculus mouse research facility c57bl/6 age 8 weeks canada taconic farms 2019-07-29v41 / 41approvedNo
538amnon high in colon right colon compared to feces in mus musculus mouse research facility c57bl/6 age 8 weeks canada taconic farms 2019-07-29v41 / 51approvedNo
538amnon high in taconic farms compared to jackson laboratories in mus musculus mouse research facility c57bl/6 age 8 weeks canada ileum terminal ileum 2019-07-29v41 / 104approvedNo
538amnon high in taconic farms compared to jackson laboratories in mus musculus mouse research facility c57bl/6 age 8 weeks canada colon right colon 2019-07-29v41 / 108approvedNo
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, feces, jackson laboratories2019-07-30v41 / 108approvedNo
538amnon high in jackson laboratories compared to taconic farms in mus musculus mouse research facility c57bl/6 age 8 weeks canada feces 2019-07-29v41 / 110approvedNo
538amnon high in ileum terminal ileum compared to feces in mus musculus mouse research facility c57bl/6 jackson laboratories age 8 weeks canada 2019-07-29v41 / 119approvedNo
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, taconic farms, feces2019-07-30v41 / 120approvedNo
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, colon, right colon, taconic farms2019-07-30v41 / 130approvedNo
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, taconic farms, ileum, terminal ileum2019-07-30v41 / 132approvedNo
538amnon high in taconic farms compared to jackson laboratories in mus musculus mouse research facility c57bl/6 age 8 weeks canada feces 2019-07-29v41 / 135approvedNo
538amnon high in colon right colon compared to feces in mus musculus mouse research facility c57bl/6 jackson laboratories age 8 weeks canada 2019-07-29v41 / 140approvedNo
538amnon high in jackson laboratories compared to taconic farms in mus musculus mouse research facility c57bl/6 age 8 weeks canada ileum terminal ileum 2019-07-29v41 / 154approvedNo
538amnon high in jackson laboratories compared to taconic farms in mus musculus mouse research facility c57bl/6 age 8 weeks canada colon right colon 2019-07-29v41 / 172approvedNo
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, ileum, terminal ileum, jackson laboratories2019-07-30v41 / 182approvedNo
538amnoncommon mus musculus, mouse, research facility, c57bl/6, age 8 weeks, canada, jackson laboratories, colon, right colon2019-07-30v41 / 186approvedNo

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