Experiment ID: 538

Field Description
namecomparison of co-housing and littermate methods for microbiota standardization in mouse models
sraprjeb28381
doihttps://doi.org/10.1016/j.celrep.2019.04.023
datamd537e52a790ce7fac2243c5614981bb576
mapmd526b482786bf15e45433bc9f62e160e5a

Annotations for experiment:

term enrichment score
TermScore
age 8 weeks0.400000
taconic farms0.333333
colon0.320000
terminal ileum0.275862
jackson laboratories0.250000
right colon0.242424
LOWER IN taconic farms0.157895
LOWER IN jackson laboratories0.136364
LOWER IN colon0.125000
LOWER IN terminal ileum0.117647
LOWER IN right colon0.111111
c57bl/60.105263
ileum0.103896
canada0.076923
LOWER IN ileum0.068966
mouse0.034483
mus musculus0.031250
research facility0.013514
feces0.006317
LOWER IN feces0.006240
Fraction of dbbact annotations with this term covered by the query
TermScore
colon0.333333
LOWER IN colon0.333333
age 8 weeks0.250000
terminal ileum0.250000
LOWER IN taconic farms0.250000
taconic farms0.250000
LOWER IN terminal ileum0.250000
right colon0.200000
LOWER IN right colon0.200000
jackson laboratories0.166667
LOWER IN jackson laboratories0.166667
ileum0.062500
LOWER IN ileum0.062500
c57bl/60.055556
canada0.040000
mouse0.017544
mus musculus0.015873
research facility0.006803
LOWER IN feces0.003185
feces0.003185
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
mus musculus1.000000
c57bl/61.000000
canada1.000000
mouse1.000000
age 8 weeks1.000000
jackson laboratories0.500000
taconic farms0.500000
feces0.384615
colon0.307692
right colon0.307692
ileum0.307692
terminal ileum0.307692
LOWER IN feces0.153846
LOWER IN taconic farms0.115385
LOWER IN jackson laboratories0.115385
LOWER IN colon0.076923
LOWER IN right colon0.076923
LOWER IN ileum0.076923
LOWER IN terminal ileum0.076923
Exp. ID User ID Description Date Region Flag Sequences
538amnondominant feces, research facility, mus musculus, c57bl/6, canada, mouse, taconic farms, age 8 weeks2019-07-30v4No1 / 11
538amnondominant feces, research facility, mus musculus, c57bl/6, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v4No1 / 12
538amnondominant research facility, colon, right colon, mus musculus, c57bl/6, canada, mouse, taconic farms, age 8 weeks2019-07-30v4No1 / 17
538amnondominant research facility, ileum, mus musculus, c57bl/6, terminal ileum, canada, mouse, taconic farms, age 8 weeks2019-07-30v4No1 / 18
538amnondominant research facility, colon, right colon, mus musculus, c57bl/6, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v4No1 / 18
538amnondominant research facility, ileum, mus musculus, c57bl/6, terminal ileum, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v4No1 / 22
538amnon high in feces compared to colon right colon in research facility mus musculus c57bl/6 canada mouse jackson laboratories age 8 weeks 2019-07-29v4No1 / 22
538amnon high in feces compared to ileum terminal ileum in research facility mus musculus c57bl/6 canada mouse taconic farms age 8 weeks 2019-07-29v4No1 / 23
538amnon high in feces compared to ileum terminal ileum in research facility mus musculus c57bl/6 canada mouse jackson laboratories age 8 weeks 2019-07-29v4No1 / 25
538amnon high in feces compared to colon right colon in research facility mus musculus c57bl/6 canada mouse taconic farms age 8 weeks 2019-07-29v4No1 / 27
538amnon high in ileum terminal ileum compared to feces in research facility mus musculus c57bl/6 canada mouse taconic farms age 8 weeks 2019-07-29v4No1 / 41
538amnon high in colon right colon compared to feces in research facility mus musculus c57bl/6 canada mouse taconic farms age 8 weeks 2019-07-29v4No1 / 51
538amnon high in taconic farms compared to jackson laboratories in research facility ileum mus musculus c57bl/6 terminal ileum canada mouse age 8 weeks 2019-07-29v4No1 / 104
538amnoncommon feces, research facility, mus musculus, c57bl/6, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v4No1 / 108
538amnon high in taconic farms compared to jackson laboratories in research facility colon right colon mus musculus c57bl/6 canada mouse age 8 weeks 2019-07-29v4No1 / 108
538amnon high in jackson laboratories compared to taconic farms in feces research facility mus musculus c57bl/6 canada mouse age 8 weeks 2019-07-29v4No1 / 110
538amnon high in ileum terminal ileum compared to feces in research facility mus musculus c57bl/6 canada mouse jackson laboratories age 8 weeks 2019-07-29v4No1 / 119
538amnoncommon feces, research facility, mus musculus, c57bl/6, canada, mouse, taconic farms, age 8 weeks2019-07-30v4No1 / 120
538amnoncommon research facility, colon, right colon, mus musculus, c57bl/6, canada, mouse, taconic farms, age 8 weeks2019-07-30v4No1 / 130
538amnoncommon research facility, ileum, mus musculus, c57bl/6, terminal ileum, canada, mouse, taconic farms, age 8 weeks2019-07-30v4No1 / 132
538amnon high in taconic farms compared to jackson laboratories in feces research facility mus musculus c57bl/6 canada mouse age 8 weeks 2019-07-29v4No1 / 135
538amnon high in colon right colon compared to feces in research facility mus musculus c57bl/6 canada mouse jackson laboratories age 8 weeks 2019-07-29v4No1 / 140
538amnon high in jackson laboratories compared to taconic farms in research facility ileum mus musculus c57bl/6 terminal ileum canada mouse age 8 weeks 2019-07-29v4No1 / 154
538amnon high in jackson laboratories compared to taconic farms in research facility colon right colon mus musculus c57bl/6 canada mouse age 8 weeks 2019-07-29v4No1 / 172
538amnoncommon research facility, ileum, mus musculus, c57bl/6, terminal ileum, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v4No1 / 182
538amnoncommon research facility, colon, right colon, mus musculus, c57bl/6, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v4No1 / 186

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