Experiment ID: 542

Field Description
namemicrobiome profiles of ligature-induced periodontitis in nonhuman primates across the lifespan
doidoi:10.1128/iai.00067-19
sraprjna516659
mapmd5a965eab1012d728a618c48a9f2a002f3
datamd506eb0275f1fcff0a0aeb44c1410bf30f

Annotations for experiment:

term enrichment score
TermScore
age 12-23 years0.500000
puerto rico0.500000
macaca mulatta0.500000
age 1-7 years0.500000
LOWER IN induced periodontitis0.285714
induced periodontitis0.285714
monkey0.222222
subgingival plaque0.181818
LOWER IN age 1-7 years0.166667
LOWER IN age 12-23 years0.166667
dentition0.142857
LOWER IN periodontitis0.142857
periodontitis0.142857
LOWER IN child0.125000
child0.105263
LOWER IN adult0.074074
adult0.026316
research facility0.020408
LOWER IN control0.016393
control0.016260
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN age 1-7 years0.500000
age 12-23 years0.500000
age 1-7 years0.500000
LOWER IN induced periodontitis0.500000
LOWER IN age 12-23 years0.500000
induced periodontitis0.500000
puerto rico0.333333
macaca mulatta0.333333
LOWER IN child0.166667
monkey0.125000
LOWER IN periodontitis0.111111
periodontitis0.111111
subgingival plaque0.100000
dentition0.076923
child0.058824
LOWER IN adult0.058824
adult0.013514
research facility0.010309
LOWER IN control0.008547
control0.008475
Fraction of annotations for the query sequences containing the term
TermScore
puerto rico1.000000
research facility1.000000
macaca mulatta1.000000
monkey1.000000
dentition1.000000
subgingival plaque1.000000
age 12-23 years0.500000
adult0.500000
age 1-7 years0.500000
child0.500000
LOWER IN induced periodontitis0.200000
LOWER IN periodontitis0.200000
control0.200000
LOWER IN control0.200000
induced periodontitis0.200000
periodontitis0.200000
LOWER IN age 1-7 years0.100000
LOWER IN child0.100000
LOWER IN age 12-23 years0.100000
LOWER IN adult0.100000
Exp. ID User ID Description Date Region Flag Sequences
542amnonhigher in ligature induced periodontitis compared to control timepoints ( high in induced periodontitis periodontitis compared to control in age 12-23 years adult puerto rico research facility macaca mulatta monkey dentition subgingival plaque )2019-08-01v4No1 / 11
542amnonhigher in ligature induced periodontitis compared to control timepoints ( high in induced periodontitis periodontitis compared to control in age 1-7 years child puerto rico research facility macaca mulatta monkey dentition subgingival plaque )2019-08-01v4No1 / 15
542amnonlower in ligature induced periodontitis compared to control timepoints ( high in control compared to induced periodontitis periodontitis in age 1-7 years child puerto rico research facility macaca mulatta monkey dentition subgingival plaque )2019-08-01v4No1 / 17
542amnonhighfreq age 1-7 years, child, puerto rico, research facility, macaca mulatta, monkey, dentition, subgingival plaque2019-08-01v4No1 / 19
542amnonhighfreq adult, age 12-23 years, puerto rico, research facility, macaca mulatta, monkey, dentition, subgingival plaque2019-08-01v4No1 / 19
542amnon high in age 1-7 years child compared to age 12-23 years adult in puerto rico research facility macaca mulatta monkey dentition subgingival plaque 2019-08-01v4No1 / 23
542amnonlower in ligature induced periodontitis compared to control timepoints ( high in control compared to induced periodontitis periodontitis in age 12-23 years adult puerto rico research facility macaca mulatta monkey dentition subgingival plaque )2019-08-01v4No1 / 33
542amnoncommon age 1-7 years, child, puerto rico, research facility, macaca mulatta, monkey, dentition, subgingival plaque2019-08-01v4No1 / 41
542amnoncommon adult, age 12-23 years, puerto rico, research facility, macaca mulatta, monkey, dentition, subgingival plaque2019-08-01v4No1 / 208
542amnon high in age 12-23 years adult compared to age 1-7 years child in puerto rico research facility macaca mulatta monkey dentition subgingival plaque 2019-08-01v4No1 / 337

Problems / suggestions? Please email info AT dbbact DOT org