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Experiment ID: 563

Field	Description
name	alterations to the gastrointestinal microbiome associated with methamphetamine use among young men who have sex with men
sra	prjna422134
doi	https://doi.org/10.1038/s41598-019-51142-8
datamd5	062d15efa40fa0bb67876cbf68f96cee
mapmd5	95d3473ce233acc821153401e546b1c1

Annotations for experiment:

term enrichment score

Term	Score
rectal swab	0.333333
msm	0.285714
homosexual	0.285714
hiv infection	0.166667
LOWER IN hiv infection	0.125000
male	0.044444
control	0.010417
LOWER IN control	0.010204
united states of america	0.007692
homo sapiens	0.006897
feces	0.005780

Fraction of dbbact annotations with this term covered by the query

Term	Score
rectal swab	0.200000
msm	0.166667
homosexual	0.166667
hiv infection	0.100000
LOWER IN hiv infection	0.100000
male	0.022727
control	0.005263
LOWER IN control	0.005263
united states of america	0.003861
homo sapiens	0.003460
feces	0.002899

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
feces	1.000000
rectal swab	1.000000
united states of america	1.000000
male	1.000000
msm	1.000000
homosexual	1.000000
hiv infection	0.500000
control	0.500000
LOWER IN control	0.166667
LOWER IN hiv infection	0.166667

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
feces	1.000000
rectal swab	1.000000
united states of america	1.000000
male	1.000000
msm	1.000000
homosexual	1.000000
hiv infection	1.000000
control	1.000000
LOWER IN control	1.000000
LOWER IN hiv infection	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
563	amnon	dominant homo sapiens, feces, rectal swab, united states of america, male, msm, homosexual, control	2019-11-18	v4	1 / 18	approved	No
563	amnon	dominant homo sapiens, feces, rectal swab, united states of america, male, msm, homosexual, hiv infection	2019-11-18	v4	1 / 20	approved	No
563	amnon	high in control compared to hiv infection in homo sapiens feces rectal swab united states of america male msm homosexual	2019-11-18	v4	1 / 58	approved	No
563	amnon	high in hiv infection compared to control in homo sapiens feces rectal swab united states of america male msm homosexual	2019-11-18	v4	1 / 100	approved	No
563	amnon	common homo sapiens, feces, rectal swab, united states of america, male, msm, homosexual, control	2019-11-18	v4	1 / 103	approved	No
563	amnon	common homo sapiens, feces, rectal swab, united states of america, male, msm, homosexual, hiv infection	2019-11-18	v4	1 / 111	approved	No

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