dbBact

Experiment ID: 58

Field	Description
name	changes in the eye microbiota associated with contact lens wearing
sra	erp013984
datamd5	e0e0b714edc1993985100519c448f6bf
mapmd5	58f5cfba6b320c46ff6413d04a7c581c

Annotations for experiment:

term enrichment score

Term	Score
conjunctiva	0.352941
contact lens	0.333333
skin of face	0.333333
skin under eyes	0.333333
new york city	0.250000
LOWER IN skin under eye	0.200000
skin under eye	0.200000
LOWER IN conjunctiva	0.200000
LOWER IN skin	0.117647
skin	0.040816
homo sapiens	0.005510

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN skin under eye	0.500000
contact lens	0.500000
skin of face	0.500000
skin under eyes	0.500000
skin under eye	0.500000
LOWER IN conjunctiva	0.500000
conjunctiva	0.333333
new york city	0.142857
LOWER IN skin	0.111111
skin	0.024390
homo sapiens	0.002762

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
new york city	1.000000
conjunctiva	0.375000
contact lens	0.250000
skin of face	0.250000
skin under eyes	0.250000
LOWER IN skin	0.125000
LOWER IN skin under eye	0.125000
skin	0.125000
skin under eye	0.125000
LOWER IN conjunctiva	0.125000

Number of experiments associating the term to the sequence

Term	Score
conjunctiva	1.000000
LOWER IN skin	1.000000
LOWER IN skin under eye	1.000000
homo sapiens	1.000000
new york city	1.000000
contact lens	1.000000
skin of face	1.000000
skin under eyes	1.000000
skin	1.000000
skin under eye	1.000000
LOWER IN conjunctiva	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
58	amnon	dominant homo sapiens, conjunctiva, new york city	2017-02-02	v4	1 / 10	approved	No
58	amnon	dominant homo sapiens, skin of face, new york city, skin under eyes	2017-02-02	v4	1 / 14	approved	No
58	amnon	high in skin skin under eye compared to conjunctiva in homo sapiens new york city	2017-02-02	v4	1 / 14	approved	No
58	amnon	dominant homo sapiens, new york city, contact lens	2017-02-02	v4	1 / 15	approved	No
58	amnon	common homo sapiens, skin of face, new york city, skin under eyes	2017-02-02	v4	1 / 21	approved	No
58	amnon	common homo sapiens, new york city, contact lens	2017-02-02	v4	1 / 23	approved	No
58	amnon	common homo sapiens, conjunctiva, new york city	2017-02-02	v4	1 / 28	approved	No
58	amnon	high in conjunctiva compared to skin skin under eye in homo sapiens new york city	2017-02-02	v4	1 / 96	approved	No

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