dbBact

Experiment ID: 604

Field	Description
name	16s rrna gene sequencing reveals an altered composition of the gut microbiota in chickens infected with a nephropathogenic infectious bronchitis virus
sra	prjna533742
doi	https://doi.org/10.1038/s41598-020-60564-8
datamd5	2fabb16bb8929bb9fc73c7bd27e19c9a
mapmd5	00849a03a71284a23878a4e7a9c22df4

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN bronchitis	0.333333
LOWER IN infectious bronchitis virus	0.333333
bronchitis	0.333333
infectious bronchitis virus	0.333333
cecal content	0.250000
chicken	0.095238
gallus gallus	0.090909
caecum	0.040000
research facility	0.010870
china	0.009852
LOWER IN control	0.009615
control	0.009346

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN bronchitis	0.500000
LOWER IN infectious bronchitis virus	0.500000
bronchitis	0.500000
infectious bronchitis virus	0.500000
cecal content	0.142857
chicken	0.050000
gallus gallus	0.047619
caecum	0.020408
research facility	0.005464
china	0.004950
LOWER IN control	0.004902
control	0.004762

Fraction of annotations for the query sequences containing the term

Term	Score
research facility	1.000000
caecum	1.000000
gallus gallus	1.000000
chicken	1.000000
cecal content	1.000000
china	1.000000
control	0.250000
LOWER IN bronchitis	0.250000
LOWER IN infectious bronchitis virus	0.250000
bronchitis	0.250000
infectious bronchitis virus	0.250000
LOWER IN control	0.250000

Number of experiments associating the term to the sequence

Term	Score
research facility	1.000000
caecum	1.000000
gallus gallus	1.000000
chicken	1.000000
cecal content	1.000000
china	1.000000
control	1.000000
LOWER IN bronchitis	1.000000
LOWER IN infectious bronchitis virus	1.000000
bronchitis	1.000000
infectious bronchitis virus	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
604	amnon	high in bronchitis infectious bronchitis virus compared to control in research facility caecum gallus gallus chicken cecal content china	2020-04-06	v3	1 / 2	approved	No
604	amnon	dominant research facility, caecum, gallus gallus, chicken, cecal content, china	2020-04-06	v3	1 / 13	approved	No
604	amnon	high in control compared to bronchitis infectious bronchitis virus in research facility caecum gallus gallus chicken cecal content china	2020-04-06	v3	1 / 16	approved	No
604	amnon	common research facility, caecum, gallus gallus, chicken, cecal content, china	2020-04-06	v3	1 / 185	approved	No

Problems / suggestions? Please visit the dbBact forum