Experiment ID: 605

Field Description
namea microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera
srasrp108387
doihttps://doi.org/10.1186/s12866-018-1154-3
datamd5d8cb8b1931403cfacc353afcd49fbd79
mapmd5246fa786f8fb86dedf548c7cf130f4e2

Annotations for experiment:

term enrichment score
TermScore
perth0.622222
recurrent otitis media0.564103
age 1-3 years0.474576
middle ear0.342857
middle ear rinse0.260870
middle ear fluid0.260870
external acoustic meatus0.160000
ear canal0.160000
nasopharynx0.155844
australia0.111111
LOWER IN recurrent otitis media0.105263
LOWER IN middle ear fluid0.105263
LOWER IN middle ear rinse0.105263
child0.082596
control0.013825
LOWER IN control0.012903
Fraction of dbbact annotations with this term covered by the query
TermScore
perth0.500000
recurrent otitis media0.500000
LOWER IN recurrent otitis media0.500000
middle ear rinse0.500000
LOWER IN middle ear fluid0.500000
middle ear fluid0.500000
LOWER IN middle ear rinse0.500000
age 1-3 years0.333333
middle ear0.333333
external acoustic meatus0.250000
ear canal0.250000
nasopharynx0.100000
australia0.058824
child0.043478
LOWER IN control0.007246
control0.007194
Fraction of annotations for the query sequences containing the term
TermScore
australia1.000000
child0.823529
age 1-3 years0.823529
perth0.823529
recurrent otitis media0.647059
nasopharynx0.352941
middle ear0.352941
control0.176471
middle ear rinse0.176471
middle ear fluid0.176471
contamination0.176471
external acoustic meatus0.117647
ear canal0.117647
LOWER IN control0.058824
LOWER IN recurrent otitis media0.058824
LOWER IN middle ear fluid0.058824
LOWER IN middle ear rinse0.058824
Exp. ID User ID Description Date Region Flag Sequences
605amnoncandidate contaminant (high in negative controls) (contamination)2020-04-07v3No1 / 1
605amnoncandidate contaminant (high in negative controls) (contamination)2020-04-07v3No1 / 1
605amnoncandidate contaminant (high in negative controls) (contamination)2020-04-07v3No1 / 1
605amnoncommon australia, nasopharynx, child, age 1-3 years, perth, control2020-04-07v3No1 / 6
605amnoncommon australia, child, age 1-3 years, perth, recurrent otitis media, middle ear, middle ear rinse2020-04-07v3No1 / 6
605amnoncommon australia, child, age 1-3 years, perth, recurrent otitis media, external acoustic meatus, ear canal2020-04-07v3No1 / 7
605amnoncommon australia, child, age 1-3 years, perth, recurrent otitis media, middle ear, middle ear fluid2020-04-07v3No1 / 9
605amnondominant australia, nasopharynx, child, age 1-3 years, perth, control2020-04-07v3No1 / 10
605amnondominant australia, child, age 1-3 years, perth, recurrent otitis media, middle ear, middle ear rinse2020-04-07v3No1 / 12
605amnondominant australia, child, age 1-3 years, perth, recurrent otitis media, middle ear, middle ear fluid2020-04-07v3No1 / 13
605amnondominant australia, child, age 1-3 years, perth, recurrent otitis media, external acoustic meatus, ear canal2020-04-07v3No1 / 13
605amnon high in middle ear fluid compared to middle ear rinse in australia child age 1-3 years perth recurrent otitis media middle ear 2020-04-07v3No1 / 13
605amnoncommon australia, nasopharynx, child, age 1-3 years, perth, recurrent otitis media2020-04-07v3No1 / 14
605amnondominant australia, nasopharynx, child, age 1-3 years, perth, recurrent otitis media2020-04-07v3No1 / 14
605amnon high in middle ear rinse compared to middle ear fluid in australia child age 1-3 years perth recurrent otitis media middle ear 2020-04-07v3No1 / 24
605amnon high in control compared to recurrent otitis media in australia nasopharynx child age 1-3 years perth 2020-04-07v3No1 / 27
605amnon high in recurrent otitis media compared to control in australia nasopharynx child age 1-3 years perth 2020-04-07v3No1 / 149

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