Experiment ID: 605

Field Description
namea microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera
srasrp108387
doihttps://doi.org/10.1186/s12866-018-1154-3
datamd5d8cb8b1931403cfacc353afcd49fbd79
mapmd5246fa786f8fb86dedf548c7cf130f4e2

Annotations for experiment:

term enrichment score
TermScore
perth0.622222
recurrent otitis media0.564103
age 1-3 years0.383562
middle ear0.342857
2-year-old human stage0.277228
middle ear rinse0.260870
middle ear fluid0.260870
external acoustic meatus0.160000
ear canal0.160000
nasopharynx0.155844
1-year-old human stage0.123348
LOWER IN recurrent otitis media0.105263
LOWER IN middle ear fluid0.105263
LOWER IN middle ear rinse0.105263
australia0.083333
child0.053743
control0.010490
LOWER IN control0.009901
Fraction of dbbact annotations with this term covered by the query
TermScore
recurrent otitis media0.500000
perth0.500000
LOWER IN recurrent otitis media0.500000
middle ear rinse0.500000
LOWER IN middle ear fluid0.500000
middle ear fluid0.500000
LOWER IN middle ear rinse0.500000
middle ear0.333333
age 1-3 years0.250000
external acoustic meatus0.250000
ear canal0.250000
2-year-old human stage0.166667
nasopharynx0.100000
1-year-old human stage0.066667
australia0.043478
child0.027778
LOWER IN control0.005405
control0.005405
Fraction of annotations for the query sequences containing the term
TermScore
australia1.000000
child0.823529
age 1-3 years0.823529
perth0.823529
2-year-old human stage0.823529
1-year-old human stage0.823529
recurrent otitis media0.647059
nasopharynx0.352941
middle ear0.352941
control0.176471
middle ear rinse0.176471
middle ear fluid0.176471
contamination0.176471
external acoustic meatus0.117647
ear canal0.117647
LOWER IN control0.058824
LOWER IN recurrent otitis media0.058824
LOWER IN middle ear fluid0.058824
LOWER IN middle ear rinse0.058824
Exp. ID User ID Description Date Region Flag Sequences
605amnoncandidate contaminant (high in negative controls) (contamination)2020-04-07v3No1 / 1
605amnoncandidate contaminant (high in negative controls) (contamination)2020-04-07v3No1 / 1
605amnoncandidate contaminant (high in negative controls) (contamination)2020-04-07v3No1 / 1
605amnoncommon middle ear, child, australia, age 1-3 years, perth, recurrent otitis media, middle ear rinse, 2-year-old human stage, 1-year-old human stage2020-04-07v3No1 / 6
605amnoncommon control, nasopharynx, child, australia, age 1-3 years, perth, 2-year-old human stage, 1-year-old human stage2020-04-07v3No1 / 6
605amnoncommon external acoustic meatus, child, australia, ear canal, age 1-3 years, perth, recurrent otitis media, 2-year-old human stage, 1-year-old human stage2020-04-07v3No1 / 7
605amnoncommon middle ear, child, australia, age 1-3 years, perth, recurrent otitis media, middle ear fluid, 2-year-old human stage, 1-year-old human stage2020-04-07v3No1 / 9
605amnondominant control, nasopharynx, child, australia, age 1-3 years, perth, 2-year-old human stage, 1-year-old human stage2020-04-07v3No1 / 10
605amnondominant middle ear, child, australia, age 1-3 years, perth, recurrent otitis media, middle ear rinse, 2-year-old human stage, 1-year-old human stage2020-04-07v3No1 / 12
605amnon high in middle ear fluid compared to middle ear rinse in middle ear child australia age 1-3 years perth recurrent otitis media 2-year-old human stage 1-year-old human stage 2020-04-07v3No1 / 13
605amnondominant external acoustic meatus, child, australia, ear canal, age 1-3 years, perth, recurrent otitis media, 2-year-old human stage, 1-year-old human stage2020-04-07v3No1 / 13
605amnondominant middle ear, child, australia, age 1-3 years, perth, recurrent otitis media, middle ear fluid, 2-year-old human stage, 1-year-old human stage2020-04-07v3No1 / 13
605amnondominant nasopharynx, child, australia, age 1-3 years, perth, recurrent otitis media, 2-year-old human stage, 1-year-old human stage2020-04-07v3No1 / 14
605amnoncommon nasopharynx, child, australia, age 1-3 years, perth, recurrent otitis media, 2-year-old human stage, 1-year-old human stage2020-04-07v3No1 / 14
605amnon high in middle ear rinse compared to middle ear fluid in middle ear child australia age 1-3 years perth recurrent otitis media 2-year-old human stage 1-year-old human stage 2020-04-07v3No1 / 24
605amnon high in control compared to recurrent otitis media in nasopharynx child australia age 1-3 years perth 2-year-old human stage 1-year-old human stage 2020-04-07v3No1 / 27
605amnon high in recurrent otitis media compared to control in nasopharynx child australia age 1-3 years perth 2-year-old human stage 1-year-old human stage 2020-04-07v3No1 / 149

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