Experiment ID: 611

Field Description
nameeffects of sex and chronic cigarette smoke exposure on the mouse cecal microbiome
sraprjna589852
doihttps://doi.org/10.1371/journal.pone.0230932
datamd5c8f62de26a684241c5f9fcbeb6bfa687
mapmd5645cf6be5eb4163616ecf66609878c7b

Annotations for experiment:

term enrichment score
TermScore
age 9 months0.666667
cecal content0.250000
ovariectomized female0.200000
LOWER IN ovariectomy0.200000
LOWER IN ovariectomized female0.200000
LOWER IN nicotine dependence0.181818
ovariectomy0.181818
nicotine dependence0.166667
LOWER IN male0.068966
canada0.068966
LOWER IN female0.062500
caecum0.040000
male0.038462
mouse0.030769
mus musculus0.027778
female0.027523
research facility0.011111
LOWER IN control0.010000
control0.009756
Fraction of dbbact annotations with this term covered by the query
TermScore
age 9 months0.500000
ovariectomized female0.500000
LOWER IN ovariectomy0.500000
LOWER IN ovariectomized female0.500000
LOWER IN nicotine dependence0.333333
ovariectomy0.333333
nicotine dependence0.250000
cecal content0.142857
LOWER IN male0.047619
LOWER IN female0.041667
canada0.035714
male0.022727
caecum0.020408
mouse0.015625
female0.014286
mus musculus0.014085
research facility0.005587
LOWER IN control0.005102
control0.004975
Fraction of annotations for the query sequences containing the term
TermScore
caecum1.000000
mouse1.000000
mus musculus1.000000
canada1.000000
research facility1.000000
age 9 months1.000000
cecal content1.000000
female0.375000
control0.250000
LOWER IN control0.250000
LOWER IN nicotine dependence0.125000
nicotine dependence0.125000
LOWER IN male0.125000
ovariectomy0.125000
ovariectomized female0.125000
LOWER IN ovariectomy0.125000
LOWER IN ovariectomized female0.125000
male0.125000
LOWER IN female0.125000
Number of experiments associating the term to the sequence
TermScore
caecum1.000000
mouse1.000000
mus musculus1.000000
canada1.000000
research facility1.000000
age 9 months1.000000
cecal content1.000000
control1.000000
LOWER IN nicotine dependence1.000000
nicotine dependence1.000000
LOWER IN control1.000000
female1.000000
LOWER IN male1.000000
ovariectomy1.000000
ovariectomized female1.000000
LOWER IN ovariectomy1.000000
LOWER IN ovariectomized female1.000000
male1.000000
LOWER IN female1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
611amnon high in male compared to female in caecum mouse mus musculus canada research facility age 9 months cecal content 2020-04-21v41 / 13approvedNo
611amnondominant caecum, mouse, mus musculus, canada, research facility, age 9 months, cecal content2020-04-21v41 / 17approvedNo
611amnon high in ovariectomy ovariectomized female compared to control in caecum mouse mus musculus canada research facility age 9 months cecal content female 2020-04-21v41 / 22approvedNo
611amnon high in control compared to ovariectomy ovariectomized female in caecum mouse mus musculus canada research facility age 9 months cecal content female 2020-04-21v41 / 22approvedNo
611amnon high in female compared to male in caecum mouse mus musculus canada research facility age 9 months cecal content 2020-04-21v41 / 33approvedNo
611amnonhigher in feces of mice exposed to cigarette smoke for 6 months compared to controls ( high in nicotine dependence compared to control in caecum mouse mus musculus canada research facility age 9 months cecal content )2020-04-21v41 / 45approvedNo
611amnonlower in feces of mice exposed to cigarette smoke for 6 months compared to controls ( high in control compared to nicotine dependence in caecum mouse mus musculus canada research facility age 9 months cecal content )2020-04-21v41 / 66approvedNo
611amnoncommon caecum, mouse, mus musculus, canada, research facility, age 9 months, cecal content2020-04-21v41 / 145approvedNo

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