Experiment ID: 611

Field Description
nameeffects of sex and chronic cigarette smoke exposure on the mouse cecal microbiome
sraprjna589852
doihttps://doi.org/10.1371/journal.pone.0230932
datamd5c8f62de26a684241c5f9fcbeb6bfa687
mapmd5645cf6be5eb4163616ecf66609878c7b

Annotations for experiment:

term enrichment score
TermScore
age 9 months0.666667
cecal content0.250000
ovariectomized female0.200000
LOWER IN ovariectomy0.200000
LOWER IN ovariectomized female0.200000
ovariectomy0.181818
LOWER IN nicotine dependence0.166667
nicotine dependence0.153846
canada0.060606
LOWER IN male0.060606
LOWER IN female0.055556
caecum0.040000
male0.035088
mouse0.029851
mus musculus0.027027
female0.025105
research facility0.010638
LOWER IN control0.009346
control0.009132
Fraction of dbbact annotations with this term covered by the query
TermScore
age 9 months0.500000
ovariectomized female0.500000
LOWER IN ovariectomy0.500000
LOWER IN ovariectomized female0.500000
ovariectomy0.333333
LOWER IN nicotine dependence0.250000
nicotine dependence0.200000
cecal content0.142857
LOWER IN male0.040000
LOWER IN female0.035714
canada0.031250
caecum0.020408
male0.020408
mouse0.015152
mus musculus0.013699
female0.012987
research facility0.005348
LOWER IN control0.004762
control0.004651
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
caecum1.000000
mus musculus1.000000
mouse1.000000
cecal content1.000000
canada1.000000
age 9 months1.000000
female0.375000
control0.250000
LOWER IN control0.250000
LOWER IN nicotine dependence0.125000
nicotine dependence0.125000
LOWER IN male0.125000
ovariectomy0.125000
ovariectomized female0.125000
LOWER IN ovariectomy0.125000
LOWER IN ovariectomized female0.125000
male0.125000
LOWER IN female0.125000
Number of experiments associating the term to the sequence
TermScore
research facility1.000000
caecum1.000000
mus musculus1.000000
mouse1.000000
cecal content1.000000
canada1.000000
age 9 months1.000000
control1.000000
LOWER IN nicotine dependence1.000000
nicotine dependence1.000000
LOWER IN control1.000000
female1.000000
LOWER IN male1.000000
ovariectomy1.000000
ovariectomized female1.000000
LOWER IN ovariectomy1.000000
LOWER IN ovariectomized female1.000000
male1.000000
LOWER IN female1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
611amnon high in male compared to female in research facility caecum mus musculus mouse cecal content canada age 9 months 2020-04-21v41 / 13approvedNo
611amnondominant research facility, caecum, mus musculus, mouse, cecal content, canada, age 9 months2020-04-21v41 / 17approvedNo
611amnon high in ovariectomy ovariectomized female compared to control in female research facility caecum mus musculus mouse cecal content canada age 9 months 2020-04-21v41 / 22approvedNo
611amnon high in control compared to ovariectomy ovariectomized female in female research facility caecum mus musculus mouse cecal content canada age 9 months 2020-04-21v41 / 22approvedNo
611amnon high in female compared to male in research facility caecum mus musculus mouse cecal content canada age 9 months 2020-04-21v41 / 33approvedNo
611amnonhigher in feces of mice exposed to cigarette smoke for 6 months compared to controls ( high in nicotine dependence compared to control in research facility caecum mus musculus mouse cecal content canada age 9 months )2020-04-21v41 / 45approvedNo
611amnonlower in feces of mice exposed to cigarette smoke for 6 months compared to controls ( high in control compared to nicotine dependence in research facility caecum mus musculus mouse cecal content canada age 9 months )2020-04-21v41 / 66approvedNo
611amnoncommon research facility, caecum, mus musculus, mouse, cecal content, canada, age 9 months2020-04-21v41 / 145approvedNo

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