dbBact

Field	Description
name	spatio-temporal and cultivar-dependent variations in the cannabis microbiome
doi	https://doi.org/10.3389/fmicb.2020.00491
sra	prjna595913
mapmd5	98f9673a287b92bf211c297d1b654443
datamd5	e701bc6de31195b041b7bf6e7850acfa

term enrichment score

Term	Score
cannabis sativa	0.666667
flowering stage	0.333333
root endosphere	0.300000
early flowering stage	0.294118
late flowering stage	0.294118
pre-vegetative stage	0.250000
LOWER IN cbd yummy cannabis plant	0.142857
hash cannabis plant	0.142857
LOWER IN hash cannabis plant	0.142857
cbd yummy cannabis plant	0.142857
cbd shark cannabis plant	0.142857
LOWER IN cbd shark cannabis plant	0.142857
propagation stage	0.142857
seedling	0.125000
root	0.113208
LOWER IN root endosphere	0.076923
LOWER IN late flowering stage	0.076923
LOWER IN early flowering stage	0.076923
canada	0.068966
LOWER IN root	0.057143
farm	0.046512
LOWER IN rhizosphere	0.045455
rhizosphere	0.038023

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN root endosphere	0.500000
cannabis sativa	0.500000
LOWER IN late flowering stage	0.500000
early flowering stage	0.500000
late flowering stage	0.500000
LOWER IN early flowering stage	0.500000
pre-vegetative stage	0.500000
LOWER IN cbd yummy cannabis plant	0.500000
hash cannabis plant	0.500000
flowering stage	0.500000
LOWER IN hash cannabis plant	0.500000
cbd yummy cannabis plant	0.500000
cbd shark cannabis plant	0.500000
LOWER IN cbd shark cannabis plant	0.500000
propagation stage	0.500000
root endosphere	0.250000
seedling	0.250000
LOWER IN root	0.090909
root	0.066667
LOWER IN rhizosphere	0.050000
canada	0.035714
farm	0.023810
rhizosphere	0.019608

Fraction of annotations for the query sequences containing the term

Term	Score
canada	1.000000
farm	1.000000
cannabis sativa	1.000000
rhizosphere	0.625000
root endosphere	0.375000
root	0.375000
flowering stage	0.250000
early flowering stage	0.208333
late flowering stage	0.208333
pre-vegetative stage	0.166667
LOWER IN cbd yummy cannabis plant	0.083333
hash cannabis plant	0.083333
LOWER IN hash cannabis plant	0.083333
cbd yummy cannabis plant	0.083333
cbd shark cannabis plant	0.083333
LOWER IN cbd shark cannabis plant	0.083333
seedling	0.083333
propagation stage	0.083333
LOWER IN root endosphere	0.041667
LOWER IN root	0.041667
LOWER IN late flowering stage	0.041667
LOWER IN early flowering stage	0.041667
LOWER IN rhizosphere	0.041667

Number of experiments associating the term to the sequence

Term	Score
LOWER IN root endosphere	1.000000
LOWER IN root	1.000000
rhizosphere	1.000000
canada	1.000000
farm	1.000000
cannabis sativa	1.000000
LOWER IN late flowering stage	1.000000
early flowering stage	1.000000
late flowering stage	1.000000
LOWER IN early flowering stage	1.000000
pre-vegetative stage	1.000000
LOWER IN rhizosphere	1.000000
root endosphere	1.000000
root	1.000000
LOWER IN cbd yummy cannabis plant	1.000000
hash cannabis plant	1.000000
flowering stage	1.000000
LOWER IN hash cannabis plant	1.000000
cbd yummy cannabis plant	1.000000
cbd shark cannabis plant	1.000000
LOWER IN cbd shark cannabis plant	1.000000
seedling	1.000000
propagation stage	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
618	amnon	dominant early flowering stage, rhizosphere, canada, farm, cannabis sativa	2020-05-04	v4	1 / 8	approved	No
618	amnon	dominant pre-vegetative stage, rhizosphere, canada, farm, cannabis sativa	2020-05-04	v4	1 / 10	approved	No
618	amnon	dominant late flowering stage, rhizosphere, canada, farm, cannabis sativa	2020-05-04	v4	1 / 12	approved	No
618	amnon	dominant pre-vegetative stage, canada, farm, root, root endosphere, cannabis sativa	2020-05-04	v4	1 / 13	approved	No
618	amnon	dominant late flowering stage, canada, farm, root, root endosphere, cannabis sativa	2020-05-04	v4	1 / 15	approved	No
618	amnon	dominant canada, farm, seedling, propagation stage, root, root endosphere, cannabis sativa	2020-05-04	v4	1 / 21	approved	No
618	amnon	dominant early flowering stage, canada, farm, root, root endosphere, cannabis sativa	2020-05-04	v4	1 / 24	approved	No
618	amnon	common canada, farm, seedling, propagation stage, root, root endosphere, cannabis sativa	2020-05-04	v4	1 / 44	approved	No
618	amnon	high in cbd yummy cannabis plant compared to cbd shark cannabis plant in flowering stage rhizosphere canada farm cannabis sativa	2020-05-04	v4	1 / 83	approved	No
618	amnon	high in cbd shark cannabis plant compared to cbd yummy cannabis plant in flowering stage rhizosphere canada farm cannabis sativa	2020-05-04	v4	1 / 139	approved	No
618	amnon	high in hash cannabis plant compared to cbd shark cannabis plant in flowering stage rhizosphere canada farm cannabis sativa	2020-05-04	v4	1 / 152	approved	No
618	amnon	high in cbd shark cannabis plant compared to hash cannabis plant in flowering stage rhizosphere canada farm cannabis sativa	2020-05-04	v4	1 / 197	approved	No
618	amnon	common early flowering stage, canada, farm, root, root endosphere, cannabis sativa	2020-05-04	v4	1 / 205	approved	No
618	amnon	high in cbd yummy cannabis plant compared to hash cannabis plant in flowering stage rhizosphere canada farm cannabis sativa	2020-05-04	v4	1 / 250	approved	No
618	amnon	common pre-vegetative stage, canada, farm, root, root endosphere, cannabis sativa	2020-05-04	v4	1 / 318	approved	No
618	amnon	common late flowering stage, canada, farm, root, root endosphere, cannabis sativa	2020-05-04	v4	1 / 352	approved	No
618	amnon	high in hash cannabis plant compared to cbd yummy cannabis plant in flowering stage rhizosphere canada farm cannabis sativa	2020-05-04	v4	1 / 416	approved	No
618	amnon	high in root endosphere root compared to rhizosphere in canada farm cannabis sativa	2020-05-04	v4	1 / 510	approved	No
618	amnon	common pre-vegetative stage, rhizosphere, canada, farm, cannabis sativa	2020-05-04	v4	1 / 530	approved	No
618	amnon	high in late flowering stage compared to early flowering stage in rhizosphere canada farm cannabis sativa	2020-05-04	v4	1 / 533	approved	No
618	amnon	common late flowering stage, rhizosphere, canada, farm, cannabis sativa	2020-05-04	v4	1 / 819	approved	No
618	amnon	common early flowering stage, rhizosphere, canada, farm, cannabis sativa	2020-05-04	v4	1 / 873	approved	No
618	amnon	high in early flowering stage compared to late flowering stage in rhizosphere canada farm cannabis sativa	2020-05-04	v4	1 / 1040	approved	No
618	amnon	high in rhizosphere compared to root endosphere root in canada farm cannabis sativa	2020-05-04	v4	1 / 3134	approved	No

Experiment ID: 618

Annotations for experiment: