dbBact

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Experiment ID: 640

Field	Description
name	pregnancy-related ecological shifts of salivary microbiota and its association with salivary sex hormones
doi	https://doi.org/10.21203/rs.3.rs-54822/v1
sra	srp113577
mapmd5	5808469a0c2d4ab7020c789953ec4511
datamd5	2985b3b1b47f83b753f0490af4f8f044

Annotations for experiment:

term enrichment score

Term	Score
shanghai district	0.500000
LOWER IN supragingival dental plaque	0.142857
supragingival dental plaque	0.133333
LOWER IN supragingival plaque	0.125000
LOWER IN dentition	0.117647
supragingival plaque	0.111111
LOWER IN saliva	0.080000
dentition	0.076923
saliva	0.035714
female	0.028169
china	0.010309
adult	0.009662
homo sapiens	0.006173

Fraction of dbbact annotations with this term covered by the query

Term	Score
shanghai district	0.333333
LOWER IN supragingival dental plaque	0.125000
LOWER IN supragingival plaque	0.100000
LOWER IN dentition	0.090909
supragingival dental plaque	0.076923
supragingival plaque	0.062500
LOWER IN saliva	0.052632
dentition	0.041667
saliva	0.018519
female	0.014286
china	0.005181
adult	0.004854
homo sapiens	0.003096

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
shanghai district	1.000000
china	1.000000
adult	1.000000
female	1.000000
saliva	0.500000
dentition	0.500000
supragingival plaque	0.500000
supragingival dental plaque	0.500000
LOWER IN dentition	0.166667
LOWER IN supragingival plaque	0.166667
LOWER IN supragingival dental plaque	0.166667
LOWER IN saliva	0.166667

Number of experiments associating the term to the sequence

Term	Score
LOWER IN dentition	1.000000
LOWER IN supragingival plaque	1.000000
LOWER IN supragingival dental plaque	1.000000
saliva	1.000000
homo sapiens	1.000000
shanghai district	1.000000
china	1.000000
adult	1.000000
female	1.000000
dentition	1.000000
supragingival plaque	1.000000
supragingival dental plaque	1.000000
LOWER IN saliva	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
640	amnon	dominant saliva, homo sapiens, shanghai district, china, adult, female	2020-08-22	v4	1 / 17	approved	No
640	amnon	dominant dentition, supragingival plaque, supragingival dental plaque, homo sapiens, shanghai district, china, adult, female	2020-08-22	v4	1 / 25	approved	No
640	amnon	high in dentition supragingival dental plaque supragingival plaque compared to saliva in homo sapiens shanghai district china adult female	2020-08-22	v4	1 / 47	approved	No
640	amnon	common dentition, supragingival plaque, supragingival dental plaque, homo sapiens, shanghai district, china, adult, female	2020-08-22	v4	1 / 65	approved	No
640	amnon	common saliva, homo sapiens, shanghai district, china, adult, female	2020-08-22	v4	1 / 117	approved	No
640	amnon	high in saliva compared to dentition supragingival plaque supragingival dental plaque in homo sapiens shanghai district china adult female	2020-08-22	v4	1 / 232	approved	No

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