Experiment ID: 642

Field Description
nametemporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, scomber japonicus. msphere 5: e00401-20
doihttps://doi.org/10.1128/msphere.00401-20
qiita11721
sraprjeb27458
mapmd5cd24b6575dffd5a2f3b8b3f7e20409d3
datamd5dd1ddfce0413e2c81dd88966df179169

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
san diego0.500000
LOWER IN gastrointestinal system0.500000
LOWER IN alimentary part of gastrointestinal system0.500000
chub mackerel0.500000
scomber japonicus0.500000
LOWER IN epidermis0.500000
alimentary part of gastrointestinal system0.500000
LOWER IN chub mackerel0.500000
LOWER IN scomber japonicus0.500000
epidermis0.500000
LOWER IN digesta0.500000
actinopterygian pyloric caecum0.500000
LOWER IN gill0.333333
LOWER IN saline water0.250000
digesta0.250000
gill0.250000
LOWER IN marine sediment0.200000
gastrointestinal system0.166667
LOWER IN sediment0.166667
LOWER IN sea water0.125000
LOWER IN skin0.125000
saline water0.111111
surface water0.100000
LOWER IN water0.076923
fish0.071429
marine sediment0.066667
LOWER IN winter0.066667
winter0.062500
pacific ocean0.055556
LOWER IN summer0.055556
LOWER IN feces0.055556
summer0.052632
sediment0.041667
skin0.034483
sea water0.032258
water0.018868
feces0.004049
Fraction of annotations for the query sequences containing the term
TermScore
san diego1.000000
pacific ocean1.000000
chub mackerel0.730769
scomber japonicus0.730769
fish0.692308
gill0.230769
gastrointestinal system0.153846
alimentary part of gastrointestinal system0.153846
saline water0.153846
water0.153846
sea water0.153846
skin0.153846
marine sediment0.115385
sediment0.115385
feces0.115385
digesta0.115385
epidermis0.115385
LOWER IN saline water0.076923
LOWER IN sea water0.076923
LOWER IN water0.076923
LOWER IN gastrointestinal system0.076923
LOWER IN alimentary part of gastrointestinal system0.076923
LOWER IN skin0.076923
LOWER IN gill0.076923
actinopterygian pyloric caecum0.076923
surface water0.076923
LOWER IN epidermis0.038462
LOWER IN chub mackerel0.038462
LOWER IN scomber japonicus0.038462
LOWER IN winter0.038462
summer0.038462
LOWER IN marine sediment0.038462
LOWER IN sediment0.038462
LOWER IN summer0.038462
winter0.038462
LOWER IN feces0.038462
LOWER IN digesta0.038462
Exp. ID User ID Description Date Region Flag Sequences
642amnondominant marine sediment, sediment, san diego, pacific ocean2020-08-28v4No1 / 5
642amnoncommon epidermis, skin, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 5
642amnoncommon actinopterygian pyloric caecum, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 6
642amnoncommon gastrointestinal system, alimentary part of gastrointestinal system, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 6
642amnondominant epidermis, skin, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 7
642amnoncommon saline water, surface water, water, sea water, san diego, pacific ocean2020-08-28v4No1 / 9
642amnondominant gastrointestinal system, alimentary part of gastrointestinal system, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 11
642amnondominant gill, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 11
642amnondominant saline water, surface water, water, sea water, san diego, pacific ocean2020-08-28v4No1 / 12
642amnondominant san diego, pacific ocean, chub mackerel, scomber japonicus, feces, digesta, fish2020-08-28v4No1 / 12
642amnondominant actinopterygian pyloric caecum, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 13
642amnoncommon gill, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v4No1 / 13
642amnoncommon san diego, pacific ocean, chub mackerel, scomber japonicus, feces, digesta, fish2020-08-28v4No1 / 17
642amnon high in gastrointestinal system alimentary part of gastrointestinal system compared to feces digesta in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 20
642amnon high in winter compared to summer in gill fish scomber japonicus chub mackerel san diego pacific ocean 2020-08-28v4No1 / 36
642amnon high in water saline water sea water compared to marine sediment sediment in san diego pacific ocean 2020-08-28v4No1 / 55
642amnon high in summer compared to winter in gill fish scomber japonicus chub mackerel san diego pacific ocean 2020-08-28v4No1 / 61
642amnon high in chub mackerel scomber japonicus skin compared to saline water sea water water in san diego pacific ocean 2020-08-28v4No1 / 66
642amnon high in skin epidermis compared to gill in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 99
642amnon high in saline water water sea water compared to chub mackerel scomber japonicus skin in san diego pacific ocean 2020-08-28v4No1 / 102
642amnon high in gastrointestinal system alimentary part of gastrointestinal system compared to gill in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 110
642amnon high in gill compared to epidermis skin in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 279
642amnoncommon marine sediment, sediment, san diego, pacific ocean2020-08-28v4No1 / 403
642amnon high in gill compared to alimentary part of gastrointestinal system gastrointestinal system in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 433
642amnon high in feces digesta compared to gastrointestinal system alimentary part of gastrointestinal system in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v4No1 / 627
642amnon high in marine sediment sediment compared to saline water sea water water in san diego pacific ocean 2020-08-28v4No1 / 3216

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