Experiment ID: 642

Field Description
nametemporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, scomber japonicus. msphere 5: e00401-20
doihttps://doi.org/10.1128/msphere.00401-20
qiita11721
sraprjeb27458
mapmd5cd24b6575dffd5a2f3b8b3f7e20409d3
datamd5dd1ddfce0413e2c81dd88966df179169

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
chub mackerel0.500000
scomber japonicus0.500000
LOWER IN chub mackerel0.500000
LOWER IN scomber japonicus0.500000
actinopterygian pyloric caecum0.500000
LOWER IN alimentary part of gastrointestinal system0.333333
alimentary part of gastrointestinal system0.333333
san diego0.250000
LOWER IN epidermis0.250000
epidermis0.250000
gill0.200000
LOWER IN gill0.200000
LOWER IN gastrointestinal system0.142857
digesta0.142857
gastrointestinal system0.142857
LOWER IN digesta0.142857
surface water0.083333
fish0.066667
marine sediment0.058824
LOWER IN marine sediment0.058824
LOWER IN winter0.052632
winter0.052632
summer0.041667
LOWER IN summer0.041667
pacific ocean0.038462
sediment0.029412
LOWER IN skin0.029412
skin0.029412
LOWER IN sediment0.029412
LOWER IN sea water0.027778
sea water0.027778
LOWER IN saline water0.023810
saline water0.023810
LOWER IN water0.018182
water0.018182
feces0.002899
LOWER IN feces0.002899
Fraction of annotations for the query sequences containing the term
TermScore
san diego1.000000
pacific ocean1.000000
chub mackerel0.730769
scomber japonicus0.730769
fish0.692308
gill0.230769
gastrointestinal system0.153846
alimentary part of gastrointestinal system0.153846
saline water0.153846
water0.153846
sea water0.153846
skin0.153846
marine sediment0.115385
sediment0.115385
feces0.115385
digesta0.115385
epidermis0.115385
LOWER IN saline water0.076923
LOWER IN sea water0.076923
LOWER IN water0.076923
LOWER IN gastrointestinal system0.076923
LOWER IN alimentary part of gastrointestinal system0.076923
LOWER IN skin0.076923
LOWER IN gill0.076923
actinopterygian pyloric caecum0.076923
surface water0.076923
LOWER IN epidermis0.038462
LOWER IN chub mackerel0.038462
LOWER IN scomber japonicus0.038462
LOWER IN winter0.038462
summer0.038462
LOWER IN marine sediment0.038462
LOWER IN sediment0.038462
LOWER IN summer0.038462
winter0.038462
LOWER IN feces0.038462
LOWER IN digesta0.038462
Number of experiments associating the term to the sequence
TermScore
LOWER IN saline water1.000000
LOWER IN sea water1.000000
LOWER IN water1.000000
marine sediment1.000000
sediment1.000000
san diego1.000000
pacific ocean1.000000
LOWER IN gastrointestinal system1.000000
LOWER IN alimentary part of gastrointestinal system1.000000
feces1.000000
digesta1.000000
fish1.000000
chub mackerel1.000000
scomber japonicus1.000000
gill1.000000
LOWER IN epidermis1.000000
LOWER IN skin1.000000
LOWER IN gill1.000000
gastrointestinal system1.000000
alimentary part of gastrointestinal system1.000000
LOWER IN chub mackerel1.000000
LOWER IN scomber japonicus1.000000
saline water1.000000
water1.000000
sea water1.000000
skin1.000000
epidermis1.000000
LOWER IN winter1.000000
summer1.000000
LOWER IN marine sediment1.000000
LOWER IN sediment1.000000
LOWER IN summer1.000000
winter1.000000
LOWER IN feces1.000000
LOWER IN digesta1.000000
actinopterygian pyloric caecum1.000000
surface water1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
642amnondominant marine sediment, sediment, san diego, pacific ocean2020-08-28v41 / 6approvedNo
642amnoncommon epidermis, skin, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v41 / 6approvedNo
642amnoncommon gastrointestinal system, alimentary part of gastrointestinal system, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v41 / 7approvedNo
642amnoncommon actinopterygian pyloric caecum, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v41 / 7approvedNo
642amnondominant epidermis, skin, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v41 / 8approvedNo
642amnoncommon saline water, surface water, water, sea water, san diego, pacific ocean2020-08-28v41 / 10approvedNo
642amnondominant gill, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v41 / 12approvedNo
642amnondominant gastrointestinal system, alimentary part of gastrointestinal system, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v41 / 12approvedNo
642amnondominant san diego, pacific ocean, chub mackerel, scomber japonicus, feces, digesta, fish2020-08-28v41 / 13approvedNo
642amnondominant saline water, surface water, water, sea water, san diego, pacific ocean2020-08-28v41 / 13approvedNo
642amnondominant actinopterygian pyloric caecum, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v41 / 14approvedNo
642amnoncommon gill, san diego, pacific ocean, chub mackerel, scomber japonicus, fish2020-08-28v41 / 14approvedNo
642amnoncommon san diego, pacific ocean, chub mackerel, scomber japonicus, feces, digesta, fish2020-08-28v41 / 18approvedNo
642amnon high in gastrointestinal system alimentary part of gastrointestinal system compared to feces digesta in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v41 / 21approvedNo
642amnon high in winter compared to summer in gill fish scomber japonicus chub mackerel san diego pacific ocean 2020-08-28v41 / 37approvedNo
642amnon high in water saline water sea water compared to marine sediment sediment in san diego pacific ocean 2020-08-28v41 / 56approvedNo
642amnon high in summer compared to winter in gill fish scomber japonicus chub mackerel san diego pacific ocean 2020-08-28v41 / 62approvedNo
642amnon high in chub mackerel scomber japonicus skin compared to saline water sea water water in san diego pacific ocean 2020-08-28v41 / 67approvedNo
642amnon high in skin epidermis compared to gill in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v41 / 100approvedNo
642amnon high in saline water water sea water compared to chub mackerel scomber japonicus skin in san diego pacific ocean 2020-08-28v41 / 103approvedNo
642amnon high in gastrointestinal system alimentary part of gastrointestinal system compared to gill in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v41 / 111approvedNo
642amnon high in gill compared to epidermis skin in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v41 / 280approvedNo
642amnoncommon marine sediment, sediment, san diego, pacific ocean2020-08-28v41 / 404approvedNo
642amnon high in gill compared to alimentary part of gastrointestinal system gastrointestinal system in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v41 / 434approvedNo
642amnon high in feces digesta compared to gastrointestinal system alimentary part of gastrointestinal system in fish chub mackerel scomber japonicus san diego pacific ocean 2020-08-28v41 / 628approvedNo
642amnon high in marine sediment sediment compared to saline water sea water water in san diego pacific ocean 2020-08-28v41 / 3217approvedNo

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