Experiment ID: 642

Field Description
nametemporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, scomber japonicus. msphere 5: e00401-20
doihttps://doi.org/10.1128/msphere.00401-20
qiita11721
sraprjeb27458
mapmd5cd24b6575dffd5a2f3b8b3f7e20409d3
datamd5dd1ddfce0413e2c81dd88966df179169

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
scomber japonicus0.500000
chub mackerel0.500000
LOWER IN scomber japonicus0.500000
LOWER IN chub mackerel0.500000
actinopterygian pyloric caecum0.500000
san diego0.333333
LOWER IN alimentary part of gastrointestinal system0.333333
LOWER IN epidermis0.333333
alimentary part of gastrointestinal system0.333333
epidermis0.333333
gill0.200000
LOWER IN gill0.200000
digesta0.142857
LOWER IN gastrointestinal system0.142857
gastrointestinal system0.142857
LOWER IN digesta0.142857
surface water0.083333
fish0.066667
marine sediment0.058824
LOWER IN winter0.058824
LOWER IN marine sediment0.058824
winter0.058824
summer0.043478
LOWER IN summer0.043478
pacific ocean0.040000
sediment0.031250
LOWER IN sediment0.031250
LOWER IN skin0.030303
skin0.030303
LOWER IN sea water0.028571
sea water0.028571
LOWER IN saline water0.024390
saline water0.024390
LOWER IN water0.018182
water0.018182
feces0.003185
LOWER IN feces0.003185
Fraction of annotations for the query sequences containing the term
TermScore
pacific ocean1.000000
san diego1.000000
scomber japonicus0.730769
chub mackerel0.730769
fish0.692308
gill0.230769
gastrointestinal system0.153846
alimentary part of gastrointestinal system0.153846
water0.153846
saline water0.153846
sea water0.153846
skin0.153846
sediment0.115385
marine sediment0.115385
feces0.115385
digesta0.115385
epidermis0.115385
LOWER IN water0.076923
LOWER IN saline water0.076923
LOWER IN sea water0.076923
LOWER IN gastrointestinal system0.076923
LOWER IN alimentary part of gastrointestinal system0.076923
LOWER IN skin0.076923
LOWER IN gill0.076923
actinopterygian pyloric caecum0.076923
surface water0.076923
LOWER IN epidermis0.038462
LOWER IN scomber japonicus0.038462
LOWER IN chub mackerel0.038462
summer0.038462
LOWER IN winter0.038462
LOWER IN sediment0.038462
LOWER IN marine sediment0.038462
winter0.038462
LOWER IN summer0.038462
LOWER IN feces0.038462
LOWER IN digesta0.038462
Exp. ID User ID Description Date Region Flag Sequences
642amnondominant sediment, marine sediment, pacific ocean, san diego2020-08-28v4No1 / 6
642amnoncommon skin, pacific ocean, san diego, fish, epidermis, scomber japonicus, chub mackerel2020-08-28v4No1 / 6
642amnoncommon pacific ocean, san diego, fish, actinopterygian pyloric caecum, scomber japonicus, chub mackerel2020-08-28v4No1 / 7
642amnoncommon gastrointestinal system, pacific ocean, san diego, fish, alimentary part of gastrointestinal system, scomber japonicus, chub mackerel2020-08-28v4No1 / 7
642amnondominant skin, pacific ocean, san diego, fish, epidermis, scomber japonicus, chub mackerel2020-08-28v4No1 / 8
642amnoncommon water, saline water, surface water, sea water, pacific ocean, san diego2020-08-28v4No1 / 10
642amnondominant gastrointestinal system, pacific ocean, san diego, fish, alimentary part of gastrointestinal system, scomber japonicus, chub mackerel2020-08-28v4No1 / 12
642amnondominant gill, pacific ocean, san diego, fish, scomber japonicus, chub mackerel2020-08-28v4No1 / 12
642amnondominant water, saline water, surface water, sea water, pacific ocean, san diego2020-08-28v4No1 / 13
642amnondominant feces, pacific ocean, san diego, digesta, fish, scomber japonicus, chub mackerel2020-08-28v4No1 / 13
642amnondominant pacific ocean, san diego, fish, actinopterygian pyloric caecum, scomber japonicus, chub mackerel2020-08-28v4No1 / 14
642amnoncommon gill, pacific ocean, san diego, fish, scomber japonicus, chub mackerel2020-08-28v4No1 / 14
642amnoncommon feces, pacific ocean, digesta, fish, san diego, scomber japonicus, chub mackerel2020-08-28v4No1 / 18
642amnon high in gastrointestinal system alimentary part of gastrointestinal system compared to feces digesta in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v4No1 / 21
642amnon high in winter compared to summer in gill pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v4No1 / 37
642amnon high in water saline water sea water compared to sediment marine sediment in pacific ocean san diego 2020-08-28v4No1 / 56
642amnon high in summer compared to winter in gill pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v4No1 / 62
642amnon high in skin scomber japonicus chub mackerel compared to water saline water sea water in pacific ocean san diego 2020-08-28v4No1 / 67
642amnon high in skin epidermis compared to gill in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v4No1 / 100
642amnon high in water saline water sea water compared to skin scomber japonicus chub mackerel in pacific ocean san diego 2020-08-28v4No1 / 103
642amnon high in gastrointestinal system alimentary part of gastrointestinal system compared to gill in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v4No1 / 111
642amnon high in gill compared to skin epidermis in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v4No1 / 280
642amnoncommon sediment, marine sediment, pacific ocean, san diego2020-08-28v4No1 / 404
642amnon high in gill compared to gastrointestinal system alimentary part of gastrointestinal system in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v4No1 / 434
642amnon high in feces digesta compared to gastrointestinal system alimentary part of gastrointestinal system in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v4No1 / 628
642amnon high in sediment marine sediment compared to water saline water sea water in pacific ocean san diego 2020-08-28v4No1 / 3217

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