dbBact

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Experiment ID: 659

Field	Description
name	antibiotic cocktail for pediatric acute severe colitis and the microbiome: the prasco randomized controlled trial
doi	10.1093/ibd/izz298
sra	prjna532645
mapmd5	a5606323fb6f1356fae1f395048ccb66
datamd5	8207972d261211bafea14db7cccaa985

Annotations for experiment:

term enrichment score

Term	Score
acute severe colitis	0.666667
before antibiotics	0.400000
LOWER IN amoxicillin	0.400000
LOWER IN doxycycline	0.400000
LOWER IN vancomycin	0.285714
ulcerative colitis	0.222222
LOWER IN metronidazole	0.200000
LOWER IN antibiotic	0.105263
child	0.054054
homo sapiens	0.007353
feces	0.006349

Fraction of dbbact annotations with this term covered by the query

Term	Score
acute severe colitis	0.500000
before antibiotics	0.500000
LOWER IN amoxicillin	0.500000
LOWER IN doxycycline	0.500000
LOWER IN vancomycin	0.250000
LOWER IN metronidazole	0.142857
ulcerative colitis	0.125000
LOWER IN antibiotic	0.062500
child	0.027778
homo sapiens	0.003690
feces	0.003185

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
ulcerative colitis	1.000000
child	1.000000
acute severe colitis	1.000000
before antibiotics	0.333333
LOWER IN antibiotic	0.333333
LOWER IN vancomycin	0.333333
LOWER IN metronidazole	0.333333
LOWER IN amoxicillin	0.333333
LOWER IN doxycycline	0.333333

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
659	amnon	high in before antibiotics compared to antibiotic vancomycin metronidazole amoxicillin doxycycline in feces homo sapiens ulcerative colitis child acute severe colitis	2020-09-19	v4	No	1 / 16
659	amnon	dominant feces, homo sapiens, ulcerative colitis, child, acute severe colitis	2020-09-19	v4	No	1 / 16
659	amnon	common feces, homo sapiens, ulcerative colitis, child, acute severe colitis	2020-09-19	v4	No	1 / 27

Problems / suggestions? Please email info AT dbbact DOT org