dbBact

Experiment ID: 67

Field	Description
name	exploring the impact of post harvest processing on the microbiota and metabolite profiles during a case of green coffee bean production
sra	erp015718
datamd5	877cd7698cb7f067fcd4e54e0d207b58
mapmd5	01f45fd3c5b6ad95de7e605c055b65ae

Annotations for experiment:

term enrichment score

Term	Score
coffea arabica	0.666667
dry processing	0.363636
wet processing	0.363636
ecuador	0.250000
start	0.222222
LOWER IN start	0.222222
LOWER IN end	0.200000
end	0.200000

Fraction of dbbact annotations with this term covered by the query

Term	Score
coffea arabica	0.500000
dry processing	0.500000
wet processing	0.500000
start	0.500000
LOWER IN start	0.500000
LOWER IN end	0.333333
end	0.333333
ecuador	0.142857

Fraction of annotations for the query sequences containing the term

Term	Score
coffea arabica	1.000000
ecuador	1.000000
dry processing	0.285714
wet processing	0.285714
start	0.142857
LOWER IN end	0.142857
end	0.142857
LOWER IN start	0.142857

Number of experiments associating the term to the sequence

Term	Score
coffea arabica	1.000000
ecuador	1.000000
dry processing	1.000000
wet processing	1.000000
start	1.000000
LOWER IN end	1.000000
end	1.000000
LOWER IN start	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
67	amnon	dominant bacteria in coffee beans during fermentation (other coffea arabica, ecuador)	2017-02-19	v4	1 / 1	approved	No
67	amnon	increases during fermentation of coffee beans ( high in end compared to start in coffea arabica ecuador )	2017-02-19	v4	1 / 3	approved	No
67	amnon	disappears during fermentation of coffee beans ( high in start compared to end in coffea arabica ecuador )	2017-02-19	v4	1 / 6	approved	No
67	amnon	high freq. in wet processing of coffee beans (dominant coffea arabica, ecuador, wet processing)	2017-02-19	v4	1 / 12	approved	No
67	amnon	high freq. in dry processing of coffee beans (dominant coffea arabica, ecuador, dry processing)	2017-02-19	v4	1 / 16	approved	No
67	amnon	common in wet processing of coffee beans (common coffea arabica, ecuador, wet processing)	2017-02-19	v4	1 / 59	approved	No
67	amnon	common in dry processing of coffee beans (common coffea arabica, ecuador, dry processing)	2017-02-19	v4	1 / 126	approved	No

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