Experiment ID: 671

Field Description
namematuration of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease
doihttps://doi.org/10.1186/s13059-019-1789-x
sraprjna546004
mapmd5179be4453a51ed6c0a825b4db306bea2
datamd58cddf79ccc74191a0cb33714744ddfa9

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN age 6 months0.500000
age 8 months0.500000
rhesus macaque0.500000
LOWER IN age 8 months0.500000
age 6 months0.500000
LOWER IN age 1 month0.333333
age 1 month0.333333
state of oregon0.166667
LOWER IN state of oregon0.166667
LOWER IN 3-month-old human stage0.142857
macaca mulatta0.142857
3-month-old human stage0.142857
monkey0.066667
captive0.047619
LOWER IN state of california0.037037
state of california0.037037
female0.015152
LOWER IN female0.015152
research facility0.006173
adult0.005376
LOWER IN adult0.005376
united states of america0.003861
feces0.002899
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
monkey1.000000
rhesus macaque1.000000
macaca mulatta1.000000
research facility1.000000
captive1.000000
feces1.000000
age 8 months0.250000
3-month-old human stage0.250000
female0.208333
adult0.208333
age 1 month0.208333
LOWER IN state of california0.166667
state of oregon0.166667
LOWER IN state of oregon0.166667
state of california0.166667
age 6 months0.125000
LOWER IN 3-month-old human stage0.083333
LOWER IN age 8 months0.083333
LOWER IN age 6 months0.041667
LOWER IN age 1 month0.041667
LOWER IN female0.041667
LOWER IN adult0.041667
Number of experiments associating the term to the sequence
TermScore
LOWER IN 3-month-old human stage1.000000
LOWER IN age 6 months1.000000
age 8 months1.000000
united states of america1.000000
monkey1.000000
rhesus macaque1.000000
macaca mulatta1.000000
research facility1.000000
captive1.000000
feces1.000000
LOWER IN age 8 months1.000000
female1.000000
adult1.000000
3-month-old human stage1.000000
LOWER IN age 1 month1.000000
LOWER IN state of california1.000000
state of oregon1.000000
LOWER IN state of oregon1.000000
state of california1.000000
age 1 month1.000000
LOWER IN female1.000000
LOWER IN adult1.000000
age 6 months1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
671amnondominant female, adult, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v41 / 15approvedNo
671amnondominant age 6 months, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v41 / 18approvedNo
671amnondominant age 8 months, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v41 / 19approvedNo
671amnondominant age 1 month, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v41 / 20approvedNo
671amnondominant 3-month-old human stage, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v41 / 21approvedNo
671amnon high in state of oregon compared to state of california in 3-month-old human stage united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v41 / 38approvedNo
671amnon high in state of california compared to state of oregon in 3-month-old human stage united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v41 / 52approvedNo
671amnon high in age 1 month compared to 3-month-old human stage in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-28v41 / 64approvedNo
671amnon high in state of california compared to state of oregon in age 8 months united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v41 / 66approvedNo
671amnon high in 3-month-old human stage age 6 months compared to age 8 months in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-28v41 / 79approvedNo
671amnoncommon age 1 month, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v41 / 81approvedNo
671amnoncommon age 6 months, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v41 / 117approvedNo
671amnon high in state of oregon compared to state of california in age 1 month united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v41 / 140approvedNo
671amnoncommon 3-month-old human stage, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v41 / 170approvedNo
671amnon high in age 8 months compared to female adult in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v41 / 182approvedNo
671amnon high in state of california compared to state of oregon in age 1 month united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v41 / 217approvedNo
671amnon high in state of oregon compared to state of california in age 8 months united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v41 / 232approvedNo
671amnoncommon age 8 months, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v41 / 252approvedNo
671amnon high in state of california compared to state of oregon in female adult united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v41 / 355approvedNo
671amnoncommon female, adult, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v41 / 356approvedNo
671amnon high in state of oregon compared to state of california in female adult united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v41 / 534approvedNo
671amnon high in 3-month-old human stage compared to age 1 month in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-28v41 / 714approvedNo
671amnon high in female adult compared to age 8 months in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v41 / 947approvedNo
671amnon high in age 8 months compared to 3-month-old human stage age 6 months in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-28v41 / 955approvedNo

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