Experiment ID: 671

Field Description
namematuration of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease
doihttps://doi.org/10.1186/s13059-019-1789-x
sraprjna546004
mapmd5179be4453a51ed6c0a825b4db306bea2
datamd58cddf79ccc74191a0cb33714744ddfa9

Annotations for experiment:

term enrichment score
TermScore
rhesus macaque0.666667
macaca mulatta0.333333
age 8 months0.333333
LOWER IN state of california0.250000
LOWER IN state of oregon0.250000
age 1 month0.227273
age 3 months0.222222
monkey0.181818
state of oregon0.166667
age 6 months0.166667
captive0.142857
LOWER IN age 8 months0.142857
LOWER IN age 3 months0.125000
LOWER IN age 6 months0.076923
LOWER IN age 1 month0.076923
state of california0.068966
LOWER IN female0.043478
LOWER IN adult0.042553
female0.032362
research facility0.015625
adult0.013624
united states of america0.008811
feces0.007273
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN age 6 months0.500000
age 8 months0.500000
rhesus macaque0.500000
LOWER IN age 8 months0.500000
LOWER IN age 1 month0.500000
LOWER IN state of california0.500000
LOWER IN state of oregon0.500000
LOWER IN age 3 months0.250000
age 1 month0.250000
age 6 months0.250000
macaca mulatta0.200000
age 3 months0.200000
state of oregon0.166667
monkey0.100000
captive0.076923
LOWER IN female0.045455
state of california0.043478
LOWER IN adult0.043478
female0.017544
research facility0.007874
adult0.007042
united states of america0.004425
feces0.003650
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
monkey1.000000
rhesus macaque1.000000
macaca mulatta1.000000
research facility1.000000
captive1.000000
feces1.000000
age 8 months0.250000
age 3 months0.250000
female0.208333
adult0.208333
age 1 month0.208333
LOWER IN state of california0.166667
state of oregon0.166667
LOWER IN state of oregon0.166667
state of california0.166667
age 6 months0.125000
LOWER IN age 3 months0.083333
LOWER IN age 8 months0.083333
LOWER IN age 6 months0.041667
LOWER IN age 1 month0.041667
LOWER IN female0.041667
LOWER IN adult0.041667
Exp. ID User ID Description Date Region Flag Sequences
671amnondominant female, adult, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v4No1 / 8
671amnondominant age 6 months, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v4No1 / 11
671amnondominant age 8 months, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v4No1 / 12
671amnondominant age 1 month, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v4No1 / 13
671amnondominant age 3 months, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v4No1 / 14
671amnon high in state of oregon compared to state of california in age 3 months united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v4No1 / 31
671amnon high in state of california compared to state of oregon in age 3 months united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v4No1 / 45
671amnon high in age 1 month compared to age 3 months in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-28v4No1 / 57
671amnon high in state of california compared to state of oregon in age 8 months united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v4No1 / 59
671amnon high in age 6 months age 3 months compared to age 8 months in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-28v4No1 / 72
671amnoncommon age 1 month, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v4No1 / 74
671amnoncommon age 6 months, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v4No1 / 110
671amnon high in state of oregon compared to state of california in age 1 month united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v4No1 / 133
671amnoncommon age 3 months, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v4No1 / 163
671amnon high in age 8 months compared to female adult in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v4No1 / 175
671amnon high in state of california compared to state of oregon in age 1 month united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v4No1 / 210
671amnon high in state of oregon compared to state of california in age 8 months united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v4No1 / 225
671amnoncommon age 8 months, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v4No1 / 245
671amnon high in state of california compared to state of oregon in female adult united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v4No1 / 348
671amnoncommon female, adult, united states of america, monkey, rhesus macaque, macaca mulatta, research facility, captive, feces2020-09-27v4No1 / 349
671amnon high in state of oregon compared to state of california in female adult united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v4No1 / 527
671amnon high in age 3 months compared to age 1 month in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-28v4No1 / 707
671amnon high in female adult compared to age 8 months in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-27v4No1 / 940
671amnon high in age 8 months compared to age 6 months age 3 months in united states of america monkey rhesus macaque macaca mulatta research facility captive feces 2020-09-28v4No1 / 948

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