Experiment ID: 673

Field Description
namesalmonella enterica serovar typhimurium temporally modulates the enteric microbiota and host responses to overcome colonization resistance in swine
doidoi:10.1128/aem.01569-20
sraprjna612572
mapmd5c92a3e1fee6011a48a993a81b1ff1724
datamd5106cc340508db9b32477907dab4f9a5d

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
ascending colon0.500000
province of alberta0.500000
LOWER IN salmonellosis0.500000
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.500000
salmonella enterica subsp. enterica serovar typhimurium0.500000
salmonellosis0.500000
LOWER IN ascending colon0.500000
age 6 weeks0.200000
male organism0.111111
LOWER IN ileum0.062500
sus scrofa0.062500
pig0.062500
ileum0.062500
canada0.040000
male0.030303
caecum0.027778
LOWER IN caecum0.027778
research facility0.006803
control0.005405
LOWER IN control0.005405
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
sus scrofa1.000000
male1.000000
canada1.000000
pig1.000000
age 6 weeks1.000000
male organism1.000000
province of alberta1.000000
caecum0.642857
ascending colon0.642857
control0.571429
salmonella enterica subsp. enterica serovar typhimurium0.428571
salmonellosis0.428571
ileum0.357143
LOWER IN salmonellosis0.142857
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.142857
LOWER IN control0.142857
LOWER IN ileum0.071429
LOWER IN caecum0.071429
LOWER IN ascending colon0.071429
Exp. ID User ID Description Date Region Flag Sequences
673amnondominant research facility, ileum, sus scrofa, male, canada, pig, age 6 weeks, male organism, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis, province of alberta2020-09-28v4No1 / 13
673amnondominant control, research facility, ileum, sus scrofa, male, canada, pig, age 6 weeks, male organism, province of alberta2020-09-28v4No1 / 14
673amnoncommon research facility, ileum, sus scrofa, male, canada, pig, age 6 weeks, male organism, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis, province of alberta2020-09-28v4No1 / 15
673amnondominant research facility, caecum, sus scrofa, male, canada, pig, age 6 weeks, ascending colon, male organism, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis, province of alberta2020-09-28v4No1 / 17
673amnondominant control, research facility, caecum, sus scrofa, male, canada, pig, age 6 weeks, ascending colon, male organism, province of alberta2020-09-28v4No1 / 22
673amnoncommon control, research facility, ileum, sus scrofa, male, canada, pig, age 6 weeks, male organism, province of alberta2020-09-28v4No1 / 25
673amnon high in salmonella enterica subsp. enterica serovar typhimurium salmonellosis compared to control in research facility caecum sus scrofa male canada pig age 6 weeks ascending colon male organism province of alberta 2020-09-28v4No1 / 25
673amnon high in salmonella enterica subsp. enterica serovar typhimurium salmonellosis compared to control in research facility caecum sus scrofa male canada pig age 6 weeks ascending colon male organism province of alberta 2020-09-28v4No1 / 29
673amnon high in ileum compared to caecum ascending colon in control research facility sus scrofa male canada pig age 6 weeks male organism province of alberta 2020-09-28v4No1 / 31
673amnon high in control compared to salmonella enterica subsp. enterica serovar typhimurium salmonellosis in research facility caecum sus scrofa male canada pig age 6 weeks ascending colon male organism province of alberta 2020-09-28v4No1 / 88
673amnoncommon research facility, caecum, sus scrofa, male, canada, pig, age 6 weeks, ascending colon, male organism, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis, province of alberta2020-09-28v4No1 / 99
673amnon high in control compared to salmonellosis salmonella enterica subsp. enterica serovar typhimurium in research facility caecum sus scrofa male canada pig age 6 weeks ascending colon male organism province of alberta 2020-09-28v4No1 / 104
673amnoncommon control, research facility, caecum, sus scrofa, male, canada, pig, age 6 weeks, ascending colon, male organism, province of alberta2020-09-28v4No1 / 154
673amnon high in caecum ascending colon compared to ileum in control research facility sus scrofa male canada pig age 6 weeks male organism province of alberta 2020-09-28v4No1 / 228

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