dbBact

Field	Description
name	microbiome variability across the native and invasive range of the ascidian clavelina oblonga
sra	srp199333
sra	prjna544485
doi	doi:10.1128/aem.02233-20
datamd5	5653521aca333da314291b5f721d7989
mapmd5	4edffff30aade11924df4011b5d25952

term enrichment score

Term	Score
harbor	0.571429
clavelina oblonga	0.571429
inner tunic	0.571429
sea squirts	0.444444
state of south carolina	0.400000
florida	0.333333
LOWER IN mediterranean sea	0.250000
LOWER IN italy	0.250000
LOWER IN brazil	0.250000
LOWER IN kingdom of spain	0.222222
LOWER IN atlantic ocean	0.222222
state of north carolina	0.166667
mediterranean sea	0.166667
atlantic ocean	0.142857
saline water	0.125000
LOWER IN united states of america	0.111111
brazil	0.064516
kingdom of spain	0.064516
italy	0.052632
sea water	0.043478
united states of america	0.006780

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN mediterranean sea	0.500000
LOWER IN italy	0.500000
harbor	0.500000
clavelina oblonga	0.500000
inner tunic	0.500000
state of south carolina	0.500000
LOWER IN brazil	0.500000
LOWER IN kingdom of spain	0.333333
sea squirts	0.333333
florida	0.333333
LOWER IN atlantic ocean	0.333333
mediterranean sea	0.166667
state of north carolina	0.111111
atlantic ocean	0.083333
LOWER IN united states of america	0.083333
saline water	0.076923
brazil	0.040000
kingdom of spain	0.040000
italy	0.031250
sea water	0.023256
united states of america	0.003413

Fraction of annotations for the query sequences containing the term

Term	Score
harbor	0.666667
clavelina oblonga	0.666667
sea squirts	0.666667
inner tunic	0.666667
united states of america	0.500000
atlantic ocean	0.500000
saline water	0.333333
sea water	0.333333
state of north carolina	0.333333
state of south carolina	0.333333
florida	0.333333
brazil	0.166667
LOWER IN kingdom of spain	0.166667
LOWER IN mediterranean sea	0.166667
LOWER IN italy	0.166667
kingdom of spain	0.166667
mediterranean sea	0.166667
italy	0.166667
LOWER IN united states of america	0.166667
LOWER IN atlantic ocean	0.166667
LOWER IN brazil	0.166667

Number of experiments associating the term to the sequence

Term	Score
united states of america	1.000000
atlantic ocean	1.000000
brazil	1.000000
LOWER IN kingdom of spain	1.000000
LOWER IN mediterranean sea	1.000000
LOWER IN italy	1.000000
harbor	1.000000
clavelina oblonga	1.000000
sea squirts	1.000000
inner tunic	1.000000
saline water	1.000000
sea water	1.000000
state of north carolina	1.000000
state of south carolina	1.000000
florida	1.000000
kingdom of spain	1.000000
mediterranean sea	1.000000
italy	1.000000
LOWER IN united states of america	1.000000
LOWER IN atlantic ocean	1.000000
LOWER IN brazil	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
699	amnon	dominant united states of america, saline water, sea water, atlantic ocean, state of north carolina, florida, state of south carolina	2028-04-01	v4	1 / 12	approved	No
699	amnon	dominant harbor, clavelina oblonga, sea squirts, inner tunic	2028-04-01	v4	1 / 13	approved	No
699	amnon	common harbor, clavelina oblonga, sea squirts, inner tunic	2028-04-01	v4	1 / 123	approved	No
699	amnon	high in kingdom of spain mediterranean sea italy compared to united states of america atlantic ocean brazil in harbor clavelina oblonga sea squirts inner tunic	2028-04-01	v4	1 / 216	approved	No
699	amnon	common united states of america, saline water, sea water, atlantic ocean, state of north carolina, state of south carolina, florida	2028-04-01	v4	1 / 254	approved	No
699	amnon	high in united states of america atlantic ocean brazil compared to kingdom of spain mediterranean sea italy in harbor clavelina oblonga sea squirts inner tunic	2028-04-01	v4	1 / 317	approved	No

Experiment ID: 699