dbBact

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Experiment ID: 705

Field	Description
name	microbial niches in raw ingredients determine microbial community assembly during kimchi fermentation
doi	https://doi.org/10.1016/j.foodchem.2020.126481
sra	prjna564474
mapmd5	cdc56b3ee9a6b275691d3c3ba5919e0c
datamd5	3b7c49a1088253178bce8c4b1163e19a

Annotations for experiment:

term enrichment score

Term	Score
fermented vegetable food product	0.545455
kimchi	0.428571
1-2 months	0.285714
LOWER IN 0-1 months	0.285714
fermentation/modification process	0.285714
brassica species (food source)	0.285714
garlic	0.250000
allium sativum	0.250000
brassica	0.222222
south korea	0.171429
late time points	0.153846
LOWER IN early time points	0.153846
mitochondrion	0.137931

Fraction of dbbact annotations with this term covered by the query

Term	Score
fermented vegetable food product	0.500000
1-2 months	0.500000
LOWER IN 0-1 months	0.500000
fermentation/modification process	0.500000
brassica species (food source)	0.500000
kimchi	0.333333
garlic	0.333333
allium sativum	0.333333
brassica	0.250000
late time points	0.125000
LOWER IN early time points	0.125000
south korea	0.100000
mitochondrion	0.083333

Fraction of annotations for the query sequences containing the term

Term	Score
south korea	0.600000
fermented vegetable food product	0.600000
kimchi	0.600000
mitochondrion	0.400000
late time points	0.200000
LOWER IN early time points	0.200000
1-2 months	0.200000
LOWER IN 0-1 months	0.200000
fermentation/modification process	0.200000
brassica	0.200000
brassica species (food source)	0.200000
garlic	0.200000
allium sativum	0.200000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
705	amnon	other mitochondrion, brassica, brassica species (food source)	2028-04-04	v3	No	1 / -6
705	amnon	garlic mitochondria (other garlic, allium sativum, mitochondrion)	2028-04-04	v3	No	1 / -6
705	amnon	increases during kimchi fermentation ( high in late time points 1-2 months fermentation/modification process compared to early time points 0-1 months in south korea kimchi fermented vegetable food product )	2028-04-04	v3	No	1 / -3
705	amnon	dominant south korea, kimchi, fermented vegetable food product	2028-04-04	v3	No	1 / -2
705	amnon	common south korea, fermented vegetable food product, kimchi	2028-04-04	v3	No	1 / 19

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